| AlleleCodeBuf | Returns an empty two-row numeric matrix that ReadAlleles()... |
| BoolBuf | Returns a bool buffer that ReadAlleles() can load phasing... |
| Buf | Returns a numeric buffer that Read() or ReadHardcalls() can... |
| ClosePgen | Closes a pgen object, releasing resources. |
| ClosePvar | Closes a pvar object, releasing memory. |
| GetAlleleCode | Look up an allele code. |
| GetAlleleCt | Returns the effective number of alleles for a variant. Note... |
| GetMaxAlleleCt | Returns the maximum GetAlleleCt() value across all variants... |
| GetRawSampleCt | Returns the number of samples in the file. |
| GetVariantChrom | Retrieve chromosome ID for given variant index. |
| GetVariantCt | Returns the number of variants in the file. |
| GetVariantId | Convert variant index to variant ID string. |
| GetVariantPos | Retrieve POS (base-pair coordinate on a chromosome) for given... |
| GetVariantsById | Convert variant ID string to variant index(es). |
| HardcallPhasePresent | Returns whether explicitly phased hardcalls are present. |
| HasSparse | Returns whether dosages for the variant_numth variant and... |
| HasSparseHardcalls | Returns whether hardcalls for the variant_numth variant and... |
| IntAlleleCodeBuf | Returns an empty two-row integer matrix that ReadAlleles()... |
| IntBuf | Returns an integer buffer that ReadHardcalls() can load to. |
| NewPgen | Opens a .pgen or PLINK 1 .bed file. |
| NewPvar | Loads variant positions, IDs, and allele codes from a .pvar... |
| pgenlibr-package | PLINK 2 Binary (.pgen) Reader |
| Read | Loads the variant_numth variant, and then fills buf with... |
| ReadAlleles | Loads the variant_numth variant, and then fills acbuf with... |
| ReadHardcalls | Loads the variant_numth variant, and then fills buf with {0,... |
| ReadIntList | Load hardcalls for multiple variants as an integer matrix. |
| ReadList | Load dosages for multiple variants as a numeric matrix. |
| ReadSparse | If HasSparse() is true, returns a sparse representation for... |
| ReadSparseHardcalls | If HasSparseHardcalls() is true, returns a sparse... |
| VariantScores | Compute variant scores. |
