NewPvar: Loads variant positions, IDs, and allele codes from a .pvar...

In pgenlibr: PLINK 2 Binary (.pgen) Reader

Loads variant positions, IDs, and allele codes from a .pvar or .bim file (which can be compressed with gzip or Zstd).

Description

Loads variant positions, IDs, and allele codes from a .pvar or .bim file (which can be compressed with gzip or Zstd).

Usage

NewPvar(filename, omit_chrom = FALSE, omit_pos = FALSE)

Arguments

filename	.pvar/.bim file path.
omit_chrom	Whether to skip CHROM column.
omit_pos	Whether to skip POS column.

Value

A pvar object, which can be queried for variant IDs and allele codes.

pgenlibr documentation built on April 3, 2025, 6:21 p.m.