geneset.names: Print all geneset names in geneset list

Description Usage Arguments Examples

View source: R/print.geneset.name.R

Description

This function allows user to print all the geneset names in the loaded geneset list such that user can find the specific query_geneset name for run.phantom funciton.

Usage

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geneset.names(geneset_list = NULL)

Arguments

geneset_list

User provided genesets list loaded by load.geneset(). Phanotm package provids four geneset lists from different resources: kegg, reactome, emory geneset and baylor modules. These genesets can be obtained with data(), e.g. data(kegg.geneset)

Examples

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## store all the geneset names in one vector
 ## Not run: 
g.names = geneset.names(reactome.geneset)

## End(Not run)

phantom documentation built on April 1, 2018, 12:08 p.m.