phcfM: Modelling anthropogenic deforestation
Version 1.2

phcfM is an R package for modelling anthropogenic deforestation. It was initially developed to obtain REDD+ baseline scenarios of deforestation for the "programme holistique de conservation des forets a Madagascar" (from which the package is named after). Parameter inference is done in a hierarchical Bayesian framework. Markov chains Monte Carlo (MCMC) are coded in C++ using the Scythe statistical library to maximize computation efficiency.

Browse man pages Browse package API and functions Browse package files

AuthorGhislain Vieilledent <ghislain.vieilledent@cirad.fr>
Date of publication2013-04-09 11:46:55
MaintainerGhislain Vieilledent <ghislain.vieilledent@cirad.fr>
LicenseGPL-3 | file LICENSE
Version1.2
URL http://phcfM.sf.net
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("phcfM")

Man pages

deforestation: Binary logistic regression with variable time-intervals...
demography: Gaussian mixed linear regression for modelling population...
invgamma: The Inverse Gamma Distribution
iwishart: The Inverse Wishart Distribution
logit: Generalized logit and inverse logit function
phcfM-package: Modelling anthropogenic deforestation in tropical forests
wishart: The Wishart Distribution

Functions

InvGamma Man page
InvWishart Man page
Wishart Man page
calling.function Source code
check.Y.Binomial Source code
check.group Source code
check.ig.prior Source code
check.interval Source code
check.mcmc.parameters Source code
check.tune Source code
check.verbose Source code
deforestation Man page Source code
demography Man page Source code
dinvgamma Man page Source code
diwish Man page Source code
dwish Man page Source code
form.Vb.start Source code
form.beta.start Source code
form.mvn.prior Source code
form.seeds Source code
form.sigma2.start Source code
form.wishart.prior Source code
inv.logit Man page Source code
logit Man page Source code
onAttach Source code
onUnload Source code
phcfM Man page
phcfM-package Man page
rinvgamma Man page Source code
riwish Man page Source code
rwish Man page Source code

Files

MD5
R
R/deforestation.R
R/zzz.R
R/hidden.R
R/demography.R
R/distributions.R
R/logit.R
DESCRIPTION
COPYING
inst
inst/phcfM_1.2.pdf
man
man/deforestation.Rd
man/demography.Rd
man/invgamma.Rd
man/phcfM-package.Rd
man/iwishart.Rd
man/logit.Rd
man/wishart.Rd
LICENSE
src
src/defs.h
src/rtmvnorm.h
src/rng.h
src/logit_invlogit.h
src/logit_invlogit.cc
src/lapack.h
src/Makevars
src/demography_fixed.cc
src/matrix_bidirectional_iterator.h
src/matrix_random_access_iterator.h
src/distributions.h
src/algorithm.h
src/matrix.h
src/mersenne.h
src/ide.h
src/error.h
src/deforestation.cc
src/Makevars.in
src/matrix_forward_iterator.h
src/optimize.h
src/demography_mixed.cc
src/smath.h
src/stat.h
src/datablock.h
src/la.h
README.md
NAMESPACE
phcfM documentation built on May 20, 2017, 3:07 a.m.