pheno: Auxiliary functions for phenological data analysis
Version 1.6

Provides some easy-to-use functions for time series analyses of (plant-) phenological data sets. These functions mainly deal with the estimation of combined phenological time series and are usually wrappers for functions that are already implemented in other R packages adapted to the special structure of phenological data and the needs of phenologists. Some date conversion functions to handle Julian dates are also provided.

AuthorJoerg Schaber
Date of publication2012-10-23 09:37:11
MaintainerJoerg Schaber <j.schaber@web.de>
LicenseGPL (>= 2)
Version1.6
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("pheno")

Popular man pages

connectedSets: Connected sets in a matrix
daysbetween: Number of days between two dates
DWD: Phenological observations
leapyear: Boolean test for leap year
maxConnectedSet: Maximal connected set in a matrix
seqMK: Sequential Mann-Kendall test for time series.
Simple: Simple example of a two-way classification table
See all...

All man pages Function index File listing

Man pages

connectedSets: Connected sets in a matrix
date2jul1: Converts string date to Julian date
date2jul2: Converts a date (day,month,year) to Julian date
daylength: Daylength at julian day i on latitude l
daysbetween: Number of days between two dates
DWD: Phenological observations
getConnectedSets: Finds connected sets in a matrix or data frame
jul2date1: Converts Julian date into string date
jul2date2: Converts Julian date to integers day,month,year
leapyear: Boolean test for leap year
matrix2raw: Converts numeric matrix to data frame
maxConnectedSet: Maximal connected set in a matrix
maxdaylength: Maximal day length on latitude l
pheno.ddm: Dense design matrix for phenological data
pheno.flm.fit: Fits a two-way linear fixed model
pheno.lad.fit: Fits a robust two-way linear model
pheno.mlm.fit: Fits a two-way linear mixed model
raw2matrix: Converts a numeric data frame to matrix
Searle: Example of a two-way classification table
seqMK: Sequential Mann-Kendall test for time series.
Simple: Simple example of a two-way classification table
tau: Kendall's normalized tau

Functions

DWD Man page
Searle Man page
Simple Man page
connectedSets Man page Source code
date2jul1 Man page Source code
date2jul2 Man page Source code
daylength Man page Source code
daysbetween Man page Source code
getConnectedSets Man page Source code
jul2date1 Man page Source code
jul2date2 Man page Source code
leapyear Man page Source code
matrix2raw Man page Source code
maxConnectedSet Man page Source code
maxdaylength Man page Source code
pheno.ddm Man page Source code
pheno.flm.fit Man page Source code
pheno.lad.fit Man page Source code
pheno.mlm.fit Man page Source code
raw2matrix Man page Source code
seqMK Man page Source code
tau Man page Source code

Files

MD5
src
src/pheno.h
src/pheno.c
R
R/tau.R
R/seqMK.R
R/raw2matrix.R
R/pheno.mlm.fit.R
R/pheno.lad.fit.R
R/pheno.flm.fit.R
R/pheno.ddm.R
R/maxdaylength.R
R/maxConnectedSet.R
R/matrix2raw.R
R/leapyear.R
R/jul2date2.R
R/jul2date1.R
R/getConnectedSets.R
R/daysbetween.R
R/daylength.R
R/date2jul2.R
R/date2jul1.R
R/connectedSets.R
NAMESPACE
man
man/tau.Rd
man/Simple.Rd
man/seqMK.Rd
man/Searle.Rd
man/raw2matrix.Rd
man/pheno.mlm.fit.Rd
man/pheno.lad.fit.Rd
man/pheno.flm.fit.Rd
man/pheno.ddm.Rd
man/maxdaylength.Rd
man/maxConnectedSet.Rd
man/matrix2raw.Rd
man/leapyear.Rd
man/jul2date2.Rd
man/jul2date1.Rd
man/getConnectedSets.Rd
man/DWD.Rd
man/daysbetween.Rd
man/daylength.Rd
man/date2jul2.Rd
man/date2jul1.Rd
man/connectedSets.Rd
DESCRIPTION
data
data/Simple.rda
data/Searle.rda
data/DWD.tab.gz
pheno documentation built on May 19, 2017, 12:37 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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