R/phoenix-package.R

In phoenix: The Phoenix Pediatric Sepsis and Septic Shock Criteria

#' @title phoenix: Phoenix and Phoenix-8 Sepsis Criteria
#'
#' @description
#' Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as described in
#' "Development and Validation of the Phoenix Criteria for Pediatric Sepsis and
#' Septic Shock" by Sanchez-Pinto, Bennett, DeWitt, Russell et al. (2024)
#' \doi{doi:10.1001/jama.2024.0196} and "International Consensus Criteria for
#' Pediatric Sepsis and Septic Shock" by Schlapbach, Watson, Sorce, et al.
#' (2024) \doi{doi:10.1001/jama.2024.0179}.
#'
#' @references
#'
#' There are two major publications to reference with respect to the development
#' of the Phoenix criteria.
#'
#' \itemize{
#' \item
#' L. Nelson Sanchez-Pinto, MD, MBI*;
#' Tellen D. Bennett, MD, MS*;
#' Peter E. DeWitt, PhD**;
#' Seth Russell, MS**;
#' Margaret N. Rebull, MA;
#' Blake Martin, MD;
#' Samuel Akech, MBChB, MMED;
#' David J. Albers, PhD;
#' Elizabeth R. Alpern, MD, MSCE;
#' Fran Balamuth, MD, PhD, MSCE;
#' Melania Bembea, MD, MPH, PhD;
#' Mohammod Jobayer Chisti, MBBS, MMed, PhD;
#' Idris Evans, MD, MSc;
#' Christopher M. Horvat, MD, MHA;
#' Juan Camilo Jaramillo-Bustamante, MD;
#' Niranjan Kissoon, MD;
#' Kusum Menon, MD, MSc;
#' Halden F. Scott, MD, MSCS;
#' Scott L. Weiss, MD;
#' Matthew O. Wiens, PharmD, PhD;
#' Jerry J. Zimmerman, MD, PhD;
#' Andrew C. Argent, MD, MBBCh, MMed***;
#' Lauren R. Sorce, PhD, RN, CPNP-AC/PC23***;
#' Luregn J. Schlapbach, MD, PhD***;
#' R. Scott Watson, MD, MPH***;
#' and the Society of Critical Care Medicine Pediatric Sepsis Definition Task Force
#' \strong{Development
#' and Validation of the Phoenix Criteria for Pediatric Sepsis and Septic
#' Shock.}
#' JAMA.
#' 2024;331(8):675–686.
#' Published online January 21, 2024.
#' \doi{doi:10.1001/jama.2024.0196}
#'
#' *Drs Sanchez-Pinto and Bennett contributed equally.
#' **Dr DeWitt and Mr Russell contributed equally.
#' ***Drs Argent, Sorce, Schlapbach, and Watson contributed equally.
#'
#' \item
#' Luregn J. Schlapbach, MD, PhD;
#' R. Scott Watson, MD, MPH;
#' Lauren R. Sorce, PhD, RN;
#' Andrew C. Argent, MD, MBBCh, MMed;
#' Kusum Menon, MD, MSc;
#' Mark W. Hall, MD;
#' Samuel Akech, MBChB, MMED, PhD;
#' David J. Albers, PhD;
#' Elizabeth R. Alpern, MD, MSCE;
#' Fran Balamuth, MD, PhD, MSCE;
#' Melania Bembea, MD, PhD;
#' Paolo Biban, MD;
#' Enitan D. Carrol, MBChB, MD;
#' Kathleen Chiotos, MD;
#' Mohammod Jobayer Chisti, MBBS, MMed, PhD;
#' Peter E. DeWitt, PhD;
#' Idris Evans, MD, MSc;
#' Cláudio  Flauzino de Oliveira, MD, PhD;
#' Christopher M. Horvat, MD, MHA;
#' David Inwald, MB, PhD;
#' Paul Ishimine, MD31;
#' Juan Camilo Jaramillo-Bustamante, MD;
#' Michael Levin, MD, PhD;
#' Rakesh Lodha, MD;
#' Blake Martin, MD;
#' Simon Nadel, MBBS;
#' Satoshi Nakagawa, MD;
#' Mark J. Peters, PhD;
#' Adrienne G. Randolph, MD, MS;
#' Suchitra Ranjit, MD;
#' Margaret N. Rebull, MA;
#' Seth Russell, MS;
#' Halden F. Scott, MD;
#' Daniela Carla de Souza, MD, PhD;
#' Pierre Tissieres, MD, DSc;
#' Scott L. Weiss, MD, MSCE;
#' Matthew O. Wiens, PharmD, PhD;
#' James L. Wynn, MD;
#' Niranjan Kissoon, MD;
#' Jerry J. Zimmerman, MD, PhD;
#' L. Nelson Sanchez-Pinto, MD;
#' Tellen D. Bennett, MD, MS;
#' for the Society of Critical Care Medicine Pediatric Sepsis Definition Task Force
#' \strong{International Consensus Criteria for Pediatric Sepsis and Septic Shock.}
#' JAMA.
#' 2024;331(8):665–674.
#' \doi{doi:10.1001/jama.2024.0179}
#'
#' *Drs Schlapbach, Watson, Sorce, and Argent contributed equally.
#' **Drs Sanchez-Pinto and Bennett contributed equally.
#' }
#'
#' @section How To Cite:
#'
#' When using this R package in your research please cite the Phoenix criteria
#' and the package.  You can get details more information via
#'
#' \code{citation('phoenix')}
#'
#' You can get bibtex entries for all the citations via
#'
#' \code{print(citation('phoenix'), bibtex = TRUE)}
#'
#' And you can get the up-to-date version and year information for the
#' \pkg{phoenix} package via
#'
#' \code{print(citation('phoenix', auto = TRUE))} and
#' \code{print(citation('phoenix', auto = TRUE), bibtex = TRUE)}.
#'
#' @seealso
#' \itemize{
#'   \item \code{\link{phoenix}} for generating the diagnostic Phoenix
#'     Sepsis score based on the four organ systems:
#'     \itemize{
#'       \item \code{\link{phoenix_cardiovascular}},
#'       \item \code{\link{phoenix_coagulation}},
#'       \item \code{\link{phoenix_neurologic}},
#'       \item \code{\link{phoenix_respiratory}},
#'     }
#'   \item \code{\link{phoenix8}} for generating the diagnostic Phoenix 8
#'     Sepsis criteria based on the four organ systems noted above and
#'     \itemize{
#'       \item \code{\link{phoenix_endocrine}},
#'       \item \code{\link{phoenix_immunologic}},
#'       \item \code{\link{phoenix_renal}},
#'       \item \code{\link{phoenix_hepatic}},
#'     }
#' }
#'
#' \code{vignette('phoenix')} for more details and examples.
#'
#' @docType package
#' @keywords internal
#' @aliases phoenix-package
"_PACKAGE"

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