photobiology: Photobiological Calculations

Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision.

AuthorPedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Date of publication2017-03-20 17:34:41 UTC
MaintainerPedro J. Aphalo <pedro.aphalo@helsinki.fi>
LicenseGPL (>= 2)
Version0.9.14
http://www.r4photobiology.info/, https://bitbucket.org/aphalo/photobiology

View on CRAN

Man pages

A2T: Convert absorbance into transmittance

absorbance: Absorbance

absorbance_spct: Calculate absorbance from spectral absorbance.

absorptance: Absorptance

absorptance_spct: Calculate absorptance from spectral absorptance.

A.illuminant.spct: CIE A illuminant data

as_energy: Convert spectral photon irradiance into spectral energy...

as.generic_mspct: Collection-of-spectra copy-constructor

as.generic_spct: Spectral-object copy constructor

as_quantum: Convert spectral energy irradiance into spectral photon...

as_quantum_mol: Convert spectral energy irradiance into spectral photon...

as.solar_date: Convert a solar_time object into solar_date object

as_tod: Convert date to time-of-day in hours, minutes or seconds

average_spct: Average spectral data.

beesxyzCMF.spct: Honeybee xyz chromaticity colour matching function data

black_body.spct: Theoretical black body

calc_multipliers: Spectral weights

calc_source_output: Light-source spectral output

ccd.spct: Spectral response of a back-thinned CCD image sensor.

c.generic_mspct: Combine collections of spectra

checkMspctVersion: Check that the "mspct.version" attribute is set

check_spct: Check validity of spectral objects

checkSpctVersion: Check that the "spct.version" attribute is set

check_spectrum: Sanity check of a spectrum.

checkTimeUnit: Check the "time.unit" attribute of an existing source_spct...

check_w.length: Sanity check of wavelengths (internal function).

ciev10.spct: Linear energy CIE 2008 luminous efficiency function 10 deg...

ciev2.spct: Linear energy CIE 2008 luminous efficiency function 2 deg...

ciexyzCC10.spct: CIE xyz chromaticity coordinates (CC) 10 deg data

ciexyzCC2.spct: CIE xyz chromaticity coordinates 2 deg data

ciexyzCMF10.spct: Linear energy CIE xyz colour matching function (CMF) 10 deg...

ciexyzCMF2.spct: Linear energy CIE xyz colour matching function (CMF) 2 deg...

class_spct: Query which is the class of an spectrum

clean: Clean (=replace) off-range values in a spectrum

clean_spct: Clean a spectrum

clear_body.spct: Theoretical clear body

clear_photobio.cache: clear the spectral weights cache

clear.spct: Theoretical spectrum of a clear clear material

clip_wl: Clip head and/or tail of a spectrum

color: Color of an object

convertTimeUnit: Convert the "time.unit" attribute of an existing source_spct...

convolve_each: Convolve function for collections of spectra

copy_attributes: Copy attributes from one R object to another

cps2irrad: Conversion from counts per second to physical quantities

D2_spectrum: Calculate deuterim lamp output spectrum from fitted constants

D2.UV586: Data for typical calibration lamps

D2.UV653: Data for typical calibration lamps

D2.UV654: Data for typical calibration lamps

D65.illuminant.spct: CIE D65 illuminant data

day_night: Times for sun positions

defunct: Defunct functions and methods

dim.generic_mspct: Dimensions of an Object

div-.generic_spct: Arithmetic Operators

div_spectra: Divide two spectra, even if the wavelengths values differ

e2q: Convert energy-based quantities into photon-based quantities.

e2qmol_multipliers: Calculate energy to quantum (mol) multipliers

e2quantum_multipliers: Calculate energy to quantum multipliers

e_fluence: Energy fluence

e_irrad: Energy irradiance

energy_irradiance: Calculate (energy) irradiance from spectral irradiance

energy_ratio: Energy:energy ratio

eq_ratio: Energy:photon ratio

e_ratio: Energy:energy ratio

e_response: Energy-based photo-response

extract: Extract or replace parts of a spectrum

extract_mspct: Extract or replace members of a collection of spectra

f_dispatcher_spct: Math function dispatcher for spectra

FEL.BN.9101.165: Data for typical calibration lamps

FEL_spectrum: Incandescent "FEL" lamp emission spectrum

filter_cps.mspct: Counts per second from a measurement of a plastic film

find_peaks: Find peaks in a spectrum

fluence: Fluence

format.solar_time: Encode in a Common Format

fscale: Rescale a spectrum using a summary function

fscale_spct: fscale a spectrum

fshift: Shift the scale of a spectrum using a summary function

fshift_spct: fshift a spectrum

generic_mspct: Collection-of-spectra constructor

getBSWFUsed: Get the "bswf.used" attribute

getInstrDesc: Get the "instr.desc" attribute

getInstrSettings: Get the "instr.settings" attribute

getMspctVersion: Get the "mspct.version" attribute

getMultipleWl: Get the "multiple.wl" attribute

getNormalized: Get the "normalized" attribute

get_peaks: Get peaks and valleys in a spectrum

getRfrType: Get the "Rfr.type" attribute

getScaled: Get the "scaled" attribute

getSpctVersion: Get the "spct.version" attribute

getTfrType: Get the "Tfr.type" attribute

getTimeUnit: Get the "time.unit" attribute of an existing source_spct...

getWhatMeasured: Get the "what.measured" attribute

getWhenMeasured: Get the "when.measured" attribute

getWhereMeasured: Get the "where.measured" attribute

green_leaf.spct: Green birch leaf reflectance.

insert_hinges: Insert wavelength values into spectral data.

insert_spct_hinges: Insert new wavelength values into a spectrum

integrate_spct: Integrate spectral data.

integrate_xy: Gives irradiance from spectral irradiance.

interpolate_spct: Map a spectrum to new wavelength values.

interpolate_spectrum: Calculate spectral values at a different set of wavelengths

interpolate_wl: Map spectra to new wavelength values.

irrad: Irradiance

irradiance: Photon (quantum) irradiance from spectral (energy)...

is_absorbance_based: Query if a spectrum contains absorbance or transmittance data

is_effective: Is an R object "effective"

is.generic_mspct: Query class of spectrum objects

is.generic_spct: Query class of spectrum objects

is_normalized: Query whether a generic spectrum has been normalized.

is.old_spct: Query if an object has old class names

is_photon_based: Query if a spectrum contains photon- or energy-based data.

is_scaled: Query whether a generic spectrum has been scaled

is.solar_time: Query class

is.summary_generic_spct: Query class of spectrum summary objects

is_tagged: Query if it is an spectrum is tagged

isValidInstrDesc: Check the "instr.desc" attribute

isValidInstrSettings: Check the "instr.settings" attribute

is.waveband: Query if it is a waveband

julian_day: Solar astronomy using Meeus' algorithm

labels: Find labels from "waveband" object

l_insert_hinges: Insert wavelength values into spectral data.

log: Logarithms and Exponentials

MathFun: Miscellaneous Mathematical Functions

max: Wavelength maximum

merge.generic_spct: Merge two generic_spct objects

midpoint: Central wavelength value

min: Wavelength minimum

minus-.generic_spct: Arithmetic Operators

mod-.generic_spct: Arithmetic Operators

msmsply: Multi-spct transform methods

mspct_classes: Names of multi-spectra classes

normalization: Normalization of an R object

normalize: Normalize spectral data

normalized_diff_ind: Calculate a normalized index.

normalize_range_arg: Normalize a range argument into a true numeric range

opaque.spct: Theoretical spectrum of an opaque material

oper_spectra: Binary operation on two spectra, even if the wavelengths...

peaks: Peaks or local maxima

photobiology-package: photobiology: Photobiological Calculations

photodiode.spct: Spectral response of a GaAsP photodiode

photon_irradiance: Photon irradiance

photon_ratio: Photo:photon ratio

photons_energy_ratio: Photon:energy ratio

plus-.generic_spct: Arithmetic Operators

polyester.spct: Transmittance spectrum of clear polyester film

pow-.generic_spct: Arithmetic Operators

print: Print a spectral object

print.solar_time: Print solar time and solar date objects

print.summary_generic_spct: Print spectral summary

print.waveband: Print a "waveband" object

prod_spectra: Multiply two spectra, even if the wavelengths values differ

q2e: Convert photon-based quantities into energy-based quantities

qe_ratio: Photon:energy ratio

q_fluence: Photon fluence

q_irrad: Photon irradiance

q_ratio: Photon:photon ratio

q_response: Photon-based photo-response

range: Wavelength range

rbindspct: Row-bind spectra

reflectance: Reflectance

reflectance_spct: Calculate reflectance from spectral reflectance

response: Integrated response

resp_spct: Calculate response from spectral response

rgb_spct: RGB color values

rmDerivedMspct: Remove "generic_mspct" and derived class attributes.

rmDerivedSpct: Remove "generic_spct" and derived class attributes.

round: Rounding of Numbers

s_e_irrad2rgb: Spectrum to rgb color conversion

setBSWFUsed: Set the "bswf.used" attribute

setGenericSpct: Convert an R object into a spectrum object.

setInstrDesc: Set the "instr.desc" attribute

setInstrSettings: Set the "instr.settings" attribute

setMultipleWl: Set the "multiple.wl" attribute

setNormalized: Set the "normalized" attribute

setRfrType: Set the "Rfr.type" attribute

setScaled: Set the "scaled" attribute

setTfrType: Set the "Tfr.type" attribute

setTimeUnit: Set the "time.unit" attribute of an existing source_spct...

setWhatMeasured: Set the "what.measured" attribute

setWhenMeasured: Set the "when.measured" attribute

setWhereMeasured: Set the "where.measured" attribute

shared_member_class: Classes common to all collection members.

sign: Sign

slash-.generic_spct: Arithmetic Operators

smooth_spct: Smooth a spectrum

solar_time: Local solar time

source_spct: Spectral-object constructor

spct_classes: Function that returns a vector containing the names of...

split2mspct: Convert a 'wide' or untidy data frame into a collection of...

split_bands: List-of-wavebands constructor

split_energy_irradiance: Energy irradiance for split spectrum regions

split_irradiance: Energy or photon irradiance for split spectrum regions

split_photon_irradiance: Photon irradiance for split spectrum regions

spread: Length of object in wavelength units

stepsize: Stepsize

subset2mspct: Convert 'long' or tidy spectral data into a collection of...

subt_spectra: Subtract two spectra

summary: Summary of a spectral object

summary_spct_classes: Function that returns a vector containing the names of...

sum_spectra: Add two spectra

sun_angles: Solar angles

sun.daily.data: Daily solar spectral irradiance (simulated)

sun.daily.spct: Daily solar spectral irradiance (simulated)

sun.data: Solar spectral irradiance (simulated)

sun.spct: Solar spectral irradiance (simulated)

T2A: Convert transmittance into absorbance.

tag: Tag a spectrum

times-.generic_spct: Arithmetic Operators

transmittance: Transmittance

transmittance_spct: Calculate transmittance from spectral transmittance.

Trig: Trigonometric Functions

trimInstrDesc: Trim the "instr.desc" attribute

trimInstrSettings: Trim the "instr.settings" attribute

trim_spct: Trim (or expand) head and/or tail

trim_tails: Trim (or expand) head and/or tail

trim_waveband: Trim (or expand) head and/or tail

trim_wl: Trim head and/or tail of a spectrum

twilight2angle: twilight argument check and conversion

tz_time_diff: Time difference between two time zones

untag: Remove tags

upgrade_spct: Upgrade one spectral object

upgrade_spectra: Upgrade one or more spectral objects

valleys: Valleys or local minima

v_insert_hinges: Insert wavelength values into spectral data.

waveband: Waveband constructor method

waveband_ratio: Photon or energy ratio

wb2rect_spct: Create tagged spectrum from wavebands

wb2spct: Create spectrum from wavebands

wb2tagged_spct: Create tagged spectrum from wavebands

white_body.spct: Theoretical white body

white_led.cps_spct: White led bulb spectrum

white_led.raw_spct: White led bulb spectrum

white_led.source_spct: White led bulb spectrum

w_length2rgb: Wavelength to rgb color conversion

w_length_range2rgb: Wavelength range to rgb color conversion

yellow_gel.spct: Transmittance spectrum of yellow theatrical gel.

Functions

A2T Man page
A2T.default Man page
A2T.filter_mspct Man page
A2T.filter_spct Man page
abs.generic_spct Man page
absorbance Man page
absorbance.default Man page
absorbance.filter_mspct Man page
absorbance.filter_spct Man page
absorbance.object_mspct Man page
absorbance.object_spct Man page
absorbance_spct Man page
absorptance Man page
absorptance.default Man page
absorptance.filter_mspct Man page
absorptance.filter_spct Man page
absorptance.object_mspct Man page
absorptance.object_spct Man page
absorptance_spct Man page
acos.generic_spct Man page
A.illuminant.spct Man page
as.chroma_mspct Man page
as.chroma_spct Man page
as.cps_mspct Man page
as.cps_spct Man page
as_energy Man page
as.filter_mspct Man page
as.filter_spct Man page
as.generic_mspct Man page
as.generic_spct Man page
asin.generic_spct Man page
as.object_mspct Man page
as.object_spct Man page
as_quantum Man page
as_quantum_mol Man page
as.raw_mspct Man page
as.raw_spct Man page
as.reflector_mspct Man page
as.reflector_spct Man page
as.response_mspct Man page
as.response_spct Man page
as.solar_date Man page
as.source_mspct Man page
as.source_spct Man page
as_tod Man page
atan.generic_spct Man page
atm_refraction_approx Man page
average_spct Man page
azimuth_angle Man page
beesxyzCMF.spct Man page
black_body.spct Man page
calc_filter_multipliers Man page
calc_multipliers Man page
calc_source_output Man page
ccd.spct Man page
ceiling.generic_spct Man page
c.generic_mspct Man page
checkMspctVersion Man page
check_spct Man page
check_spct.chroma_spct Man page
check_spct.cps_spct Man page
check_spct.default Man page
check_spct.filter_spct Man page
check_spct.generic_spct Man page
check_spct.object_spct Man page
check_spct.raw_spct Man page
check_spct.reflector_spct Man page
check_spct.response_spct Man page
check_spct.source_spct Man page
checkSpctVersion Man page
check_spectrum Man page
checkTimeUnit Man page
check_w.length Man page
chroma_mspct Man page
[.chroma_spct Man page
chroma_spct Man page
ciev10.spct Man page
ciev2.spct Man page
ciexyzCC10.spct Man page
ciexyzCC2.spct Man page
ciexyzCMF10.spct Man page
ciexyzCMF2.spct Man page
class_spct Man page
clean Man page
clean.cps_mspct Man page
clean.cps_spct Man page
clean.default Man page
clean.filter_mspct Man page
clean.filter_spct Man page
clean.generic_mspct Man page
clean.generic_spct Man page
clean.raw_mspct Man page
clean.raw_spct Man page
clean.reflector_mspct Man page
clean.reflector_spct Man page
clean.response_mspct Man page
clean.response_spct Man page
clean.source_mspct Man page
clean.source_spct Man page
clean_spct Man page
clear_body.spct Man page
clear_photobio.cache Man page
clear.spct Man page
clip_wl Man page
clip_wl.default Man page
clip_wl.generic_mspct Man page
clip_wl.generic_spct Man page
clip_wl.list Man page
clip_wl.waveband Man page
color Man page
color.default Man page
color.list Man page
color.numeric Man page
color.source_mspct Man page
color.source_spct Man page
color.waveband Man page
convertTimeUnit Man page
convolve_each Man page
copy_attributes Man page
copy_attributes.default Man page
copy_attributes.generic_spct Man page
copy_attributes.waveband Man page
cos.generic_spct Man page
cospi.generic_spct Man page
cps2irrad Man page
cps2Rfr Man page
cps2Tfr Man page
cps_mspct Man page
[.cps_spct Man page
cps_spct Man page
D2_spectrum Man page
D2.UV586 Man page
D2.UV653 Man page
D2.UV654 Man page
D65.illuminant.spct Man page
day_length Man page
day_night Man page
defunct Man page
dim<-.generic_mspct Man page
dim.generic_mspct Man page
div-.generic_spct Man page
div_spectra Man page
e2q Man page
e2q.default Man page
e2qmol_multipliers Man page
e2q.response_mspct Man page
e2q.response_spct Man page
e2q.source_mspct Man page
e2q.source_spct Man page
e2quantum_multipliers Man page
eccent_earth_orbit Man page
e_fluence Man page
e_fluence.default Man page
e_fluence.source_mspct Man page
e_fluence.source_spct Man page
e_irrad Man page
e_irrad.default Man page
e_irrad.source_mspct Man page
e_irrad.source_spct Man page
elevation_angle Man page
energy_irradiance Man page
energy_ratio Man page
eq_of_time Man page
eq_ratio Man page
eq_ratio.default Man page
eq_ratio.source_mspct Man page
eq_ratio.source_spct Man page
e_ratio Man page
e_ratio.default Man page
e_ratio.source_mspct Man page
e_ratio.source_spct Man page
e_response Man page
e_response.default Man page
e_response.response_mspct Man page
e_response.response_spct Man page
exp.generic_spct Man page
extend2extremes Man page
Extract Man page
Extract_mspct Man page
f_dispatcher_spct Man page
FEL.BN.9101.165 Man page
FEL_spectrum Man page
filter_cps.mspct Man page
filter_mspct Man page
[.filter_spct Man page
filter_spct Man page
find_peaks Man page
floor.generic_spct Man page
fluence Man page
fluence.default Man page
fluence.source_mspct Man page
fluence.source_spct Man page
f_mspct Man page
format.solar_time Man page
fscale Man page
fscale.cps_mspct Man page
fscale.cps_spct Man page
fscale.default Man page
fscale.filter_mspct Man page
fscale.filter_spct Man page
fscale.generic_mspct Man page
fscale.generic_spct Man page
fscale.raw_mspct Man page
fscale.raw_spct Man page
fscale.reflector_mspct Man page
fscale.reflector_spct Man page
fscale.response_mspct Man page
fscale.response_spct Man page
fscale.source_mspct Man page
fscale.source_spct Man page
fscale_spct Man page
fshift Man page
fshift.cps_mspct Man page
fshift.cps_spct Man page
fshift.default Man page
fshift.filter_mspct Man page
fshift.filter_spct Man page
fshift.generic_mspct Man page
fshift.generic_spct Man page
fshift.raw_mspct Man page
fshift.raw_spct Man page
fshift.reflector_mspct Man page
fshift.reflector_spct Man page
fshift.response_mspct Man page
fshift.response_spct Man page
fshift.source_mspct Man page
fshift.source_spct Man page
fshift_spct Man page
[<-.generic_mspct Man page
[.generic_mspct Man page
[[<-.generic_mspct Man page
$<-.generic_mspct Man page
generic_mspct Man page
^.generic_spct Man page
-.generic_spct Man page
/.generic_spct Man page
[<-.generic_spct Man page
[.generic_spct Man page
$<-.generic_spct Man page
*.generic_spct Man page
\%/\%.generic_spct Man page
\%\%.generic_spct Man page
+.generic_spct Man page
generic_spct Man page
geom_mean_anom_sun Man page
geom_mean_lon_sun Man page
getBSWFUsed Man page
getInstrDesc Man page
getInstrSettings Man page
getMspctVersion Man page
getMultipleWl Man page
getNormalized Man page
get_peaks Man page
getRfrType Man page
getScaled Man page
getSpctVersion Man page
getTfrType Man page
getTimeUnit Man page
get_valleys Man page
getWhatMeasured Man page
getWhenMeasured Man page
getWhenMeasured.default Man page
getWhenMeasured.generic_mspct Man page
getWhenMeasured.generic_spct Man page
getWhenMeasured.summary_generic_spct Man page
getWhereMeasured Man page
getWhereMeasured.default Man page
getWhereMeasured.generic_mspct Man page
getWhereMeasured.generic_spct Man page
getWhereMeasured.summary_generic_spct Man page
green_leaf.spct Man page
ha_sunrise Man page
hour_angle Man page
insert_hinges Man page
insert_spct_hinges Man page
integrate_spct Man page
integrate_xy Man page
interpolate_mspct Man page
interpolate_spct Man page
interpolate_spectrum Man page
interpolate_wl Man page
interpolate_wl.default Man page
interpolate_wl.generic_mspct Man page
interpolate_wl.generic_spct Man page
irrad Man page
irrad.default Man page
irradiance Man page
irrad.source_mspct Man page
irrad.source_spct Man page
is_absorbance_based Man page
is.any_mspct Man page
is.any_spct Man page
is.any_summary_spct Man page
is.chroma_mspct Man page
is.chroma_spct Man page
is.cps_mspct Man page
is.cps_spct Man page
is_effective Man page
is_effective.default Man page
is_effective.generic_spct Man page
is_effective.source_spct Man page
is_effective.summary_generic_spct Man page
is_effective.summary_source_spct Man page
is_effective.waveband Man page
is_energy_based Man page
is.filter_mspct Man page
is.filter_spct Man page
is.generic_mspct Man page
is.generic_spct Man page
is_normalized Man page
is.object_mspct Man page
is.object_spct Man page
is.old_spct Man page
is_photon_based Man page
is.raw_mspct Man page
is.raw_spct Man page
is.reflector_mspct Man page
is.reflector_spct Man page
is.response_mspct Man page
is.response_spct Man page
is_scaled Man page
is.solar_date Man page
is.solar_time Man page
is.source_mspct Man page
is.source_spct Man page
is.summary_chroma_spct Man page
is.summary_cps_spct Man page
is.summary_filter_spct Man page
is.summary_generic_spct Man page
is.summary_object_spct Man page
is.summary_raw_spct Man page
is.summary_reflector_spct Man page
is.summary_response_spct Man page
is.summary_source_spct Man page
is_tagged Man page
is_transmittance_based Man page
isValidInstrDesc Man page
isValidInstrSettings Man page
is.waveband Man page
julian_century Man page
julian_day Man page
labels Man page
labels.generic_spct Man page
labels.waveband Man page
l_insert_hinges Man page
log Man page
log10.generic_spct Man page
log2.generic_spct Man page
log.generic_spct Man page
MathFun Man page
max Man page
max.generic_mspct Man page
max.generic_spct Man page
max.waveband Man page
mean_obliq_eclip Man page
merge.generic_spct Man page
midpoint Man page
midpoint.default Man page
midpoint.generic_mspct Man page
midpoint.generic_spct Man page
midpoint.numeric Man page
midpoint.waveband Man page
min Man page
min.generic_mspct Man page
min.generic_spct Man page
minus-.generic_spct Man page
min.waveband Man page
mod-.generic_spct Man page
msaply Man page
msdply Man page
mslply Man page
msmsply Man page
mspct_classes Man page
mutate_mspct Man page
new_waveband Man page
night_length Man page
noon_time Man page
normalization Man page
normalization.default Man page
normalization.waveband Man page
normalize Man page
normalize.cps_mspct Man page
normalize.cps_spct Man page
normalized_diff_ind Man page
normalize.default Man page
normalize.filter_mspct Man page
normalize.filter_spct Man page
normalize.generic_spct Man page
normalize_range_arg Man page
normalize.raw_mspct Man page
normalize.raw_spct Man page
normalize.reflector_mspct Man page
normalize.reflector_spct Man page
normalize.response_mspct Man page
normalize.response_spct Man page
normalize.source_mspct Man page
normalize.source_spct Man page
object_mspct Man page
[.object_spct Man page
object_spct Man page
obliq_corr Man page
opaque.spct Man page
oper_spectra Man page
peaks Man page
peaks.cps_spct Man page
peaks.default Man page
peaks.filter_spct Man page
peaks.generic_mspct Man page
peaks.generic_spct Man page
peaks.numeric Man page
peaks.reflector_spct Man page
peaks.response_spct Man page
peaks.source_spct Man page
photobiology Man page
photobiology-package Man page
photodiode.spct Man page
photon_irradiance Man page
photon_ratio Man page
photons_energy_ratio Man page
plus-.generic_spct Man page
polyester.spct Man page
print Man page
print.generic_mspct Man page
print.generic_spct Man page
print.solar_date Man page
print.solar_time Man page
print.summary_generic_spct Man page
print.waveband Man page
prod_spectra Man page
q2e Man page
q2e.default Man page
q2e.response_mspct Man page
q2e.response_spct Man page
q2e.source_mspct Man page
q2e.source_spct Man page
qe_ratio Man page
qe_ratio.default Man page
qe_ratio.source_mspct Man page
qe_ratio.source_spct Man page
q_fluence Man page
q_fluence.default Man page
q_fluence.source_mspct Man page
q_fluence.source_spct Man page
q_irrad Man page
q_irrad.default Man page
q_irrad.source_mspct Man page
q_irrad.source_spct Man page
q_ratio Man page
q_ratio.default Man page
q_ratio.source_mspct Man page
q_ratio.source_spct Man page
q_response Man page
q_response.default Man page
q_response.response_mspct Man page
q_response.response_spct Man page
range Man page
range.generic_mspct Man page
range.generic_spct Man page
range.waveband Man page
raw_mspct Man page
[.raw_spct Man page
raw_spct Man page
rbindspct Man page
reflectance Man page
reflectance.default Man page
reflectance.object_mspct Man page
reflectance.object_spct Man page
reflectance.reflector_mspct Man page
reflectance.reflector_spct Man page
reflectance_spct Man page
reflector_mspct Man page
[.reflector_spct Man page
reflector_spct Man page
response Man page
response.default Man page
response_mspct Man page
response.response_mspct Man page
response.response_spct Man page
[.response_spct Man page
response_spct Man page
resp_spct Man page
rgb_spct Man page
rmDerivedMspct Man page
rmDerivedSpct Man page
round Man page
round.generic_spct Man page
s_e_irrad2rgb Man page
setBSWFUsed Man page
setChromaSpct Man page
setCpsSpct Man page
setFilterSpct Man page
setGenericSpct Man page
setInstrDesc Man page
setInstrSettings Man page
setMultipleWl Man page
setNormalized Man page
setObjectSpct Man page
setRawSpct Man page
setReflectorSpct Man page
setResponseSpct Man page
setRfrType Man page
setScaled Man page
setSourceSpct Man page
setTfrType Man page
setTimeUnit Man page
setWhatMeasured Man page
setWhenMeasured Man page
setWhenMeasured.default Man page
setWhenMeasured.generic_mspct Man page
setWhenMeasured.generic_spct Man page
setWhenMeasured.summary_generic_spct Man page
setWhereMeasured Man page
setWhereMeasured.default Man page
setWhereMeasured.generic_mspct Man page
setWhereMeasured.generic_spct Man page
setWhereMeasured.summary_generic_spct Man page
shared_member_class Man page
sign Man page
sign.generic_spct Man page
signif.generic_spct Man page
sin.generic_spct Man page
sinpi.generic_spct Man page
slash-.generic_spct Man page
smooth_spct Man page
smooth_spct.default Man page
smooth_spct.filter_spct Man page
smooth_spct.reflector_spct Man page
smooth_spct.response_spct Man page
smooth_spct.source_spct Man page
solar_datetime Man page
solar_noon Man page
solar_time Man page
solar_tod Man page
source_mspct Man page
[.source_spct Man page
source_spct Man page
spct_classes Man page
split2cps_mspct Man page
split2filter_mspct Man page
split2mspct Man page
split2raw_mspct Man page
split2reflector_mspct Man page
split2response_mspct Man page
split2source_mspct Man page
split_bands Man page
split_energy_irradiance Man page
split_irradiance Man page
split_photon_irradiance Man page
spread Man page
spread.default Man page
spread.generic_mspct Man page
spread.generic_spct Man page
spread.numeric Man page
spread.waveband Man page
sqrt.generic_spct Man page
stepsize Man page
stepsize.default Man page
stepsize.generic_mspct Man page
stepsize.generic_spct Man page
stepsize.numeric Man page
subset2mspct Man page
subt_spectra Man page
summary Man page
summary.generic_spct Man page
summary_spct_classes Man page
sum_spectra Man page
sun_angles Man page
sun_app_lon Man page
sun_azimuth Man page
sun.daily.data Man page
sun.daily.spct Man page
sun.data Man page
sun_declin Man page
sun_elevation Man page
sun_eq_of_ctr Man page
sunlight_duration Man page
sun_rad_vector Man page
sunrise Man page
sunrise_time Man page
sun_rt_ascen Man page
sunset Man page
sunset_time Man page
sun.spct Man page
sun_zenith_angle Man page
T2A Man page
T2A.default Man page
T2A.filter_mspct Man page
T2A.filter_spct Man page
tag Man page
tag.default Man page
tag.generic_mspct Man page
tag.generic_spct Man page
tan.generic_spct Man page
tanpi.generic_spct Man page
times-.generic_spct Man page
transmittance Man page
transmittance.default Man page
transmittance.filter_mspct Man page
transmittance.filter_spct Man page
transmittance.object_mspct Man page
transmittance.object_spct Man page
transmittance_spct Man page
Trig Man page
Trig Man page
trim2overlap Man page
trimInstrDesc Man page
trimInstrSettings Man page
trim_mspct Man page
trim_spct Man page
trim_tails Man page
trim_waveband Man page
trim_wl Man page
trim_wl.default Man page
trim_wl.generic_mspct Man page
trim_wl.generic_spct Man page
trim_wl.list Man page
trim_wl.waveband Man page
trunc.generic_spct Man page
twilight2angle Man page
tz_time_diff Man page
untag Man page
untag.default Man page
untag.generic_mspct Man page
untag.generic_spct Man page
upgrade_spct Man page
upgrade_spectra Man page
valleys Man page
valleys.cps_spct Man page
valleys.default Man page
valleys.filter_spct Man page
valleys.generic_mspct Man page
valleys.generic_spct Man page
valleys.numeric Man page
valleys.reflector_spct Man page
valleys.response_spct Man page
valleys.source_spct Man page
var_y Man page
v_insert_hinges Man page
waveband Man page
waveband_ratio Man page
wb2rect_spct Man page
wb2spct Man page
wb2tagged_spct Man page
white_body.spct Man page
white_led.cps_spct Man page
white_led.raw_spct Man page
white_led.source_spct Man page
w_length2rgb Man page
w_length_range2rgb Man page
yellow_gel.spct Man page
zenith_angle Man page

Files

photobiology
photobiology/inst
photobiology/inst/staticdocs
photobiology/inst/staticdocs/README.md
photobiology/inst/staticdocs/index.r
photobiology/inst/CITATION
photobiology/inst/doc
photobiology/inst/doc/userguide-astronomy.R
photobiology/inst/doc/userguide-radiation.Rmd
photobiology/inst/doc/userguide-astronomy.Rmd
photobiology/inst/doc/userguide-radiation.R
photobiology/inst/doc/userguide-radiation.html
photobiology/inst/doc/userguide-intro.html
photobiology/inst/doc/userguide-intro.Rmd
photobiology/inst/doc/userguide-astronomy.html
photobiology/NAMESPACE
photobiology/NEWS
photobiology/data
photobiology/data/A.illuminant.spct.rda
photobiology/data/ciev10.spct.rda
photobiology/data/filter-cps-mspct.rda
photobiology/data/ciexyzCC2.spct.rda
photobiology/data/sun.daily.spct.rda
photobiology/data/ciexyzCC10.spct.rda
photobiology/data/photodiode.spct.rda
photobiology/data/opaque.spct.rda
photobiology/data/clear.spct.rda
photobiology/data/ccd.spct.rda
photobiology/data/D2-FEL-constants.rda
photobiology/data/ciexyzCMF2.spct.rda
photobiology/data/white_body.spct.rda
photobiology/data/sun.spct.rda
photobiology/data/ciexyzCMF10.spct.rda
photobiology/data/yellow.gel.rda
photobiology/data/sun.daily.data.rda
photobiology/data/black_body.spct.rda
photobiology/data/white-led-spct.rda
photobiology/data/ciev2.spct.rda
photobiology/data/polyester.spct.rda
photobiology/data/sun.data.rda
photobiology/data/green_leaf.spct.rda
photobiology/data/D65.illuminant.spct.rda
photobiology/data/clear_body.spct.rda
photobiology/data/beesxyz.spct.rda
photobiology/R
photobiology/R/spct.fscale.R photobiology/R/energy.irradiance.R photobiology/R/prod.spectra.R photobiology/R/auto.hinges.R photobiology/R/spct.new.R photobiology/R/irradiance.R photobiology/R/raw.data.R photobiology/R/led.data.R photobiology/R/filter.data.R photobiology/R/split.energy.irradiance.R photobiology/R/waveband.ratio.R photobiology/R/trim.waveband.R photobiology/R/spct.trim.R photobiology/R/spct.peaks.R photobiology/R/normalized.diff.idx.R photobiology/R/spct.clean.R photobiology/R/as.quantum.R
photobiology/R/sun.calc.r
photobiology/R/as.energy.R photobiology/R/spct.rgb.spct.R photobiology/R/ciexyz.data.R photobiology/R/spct.fshift.R photobiology/R/zmspct.classes.R photobiology/R/spct.response.R photobiology/R/insert.hinges.R photobiology/R/waveband.new.R photobiology/R/spct.conversion.R photobiology/R/spct.absorptance.R photobiology/R/split.irradiance.R photobiology/R/cieillum.data.R photobiology/R/d2.spectrum.R photobiology/R/meeus.R photobiology/R/energy.ratio.R photobiology/R/spct.smooth.spct.R photobiology/R/e2quantum.multipliers.R photobiology/R/d2.fel.data.R photobiology/R/spct.irrad.R photobiology/R/integrate.xy.R photobiology/R/fel.spectrum.R photobiology/R/div.spectra.R photobiology/R/spct.tag.R photobiology/R/photon.irradiance.R photobiology/R/spct.operators.R photobiology/R/response.data.R photobiology/R/calc.multipliers.R photobiology/R/e2qmol.multipliers.R photobiology/R/photobiology.R
photobiology/R/spct.classes.r
photobiology/R/rbindspct.r
photobiology/R/spct.integrate.R photobiology/R/trim.tails.R photobiology/R/spct.reflectance.R photobiology/R/split.photon.irradiance.R photobiology/R/leaf.data.R photobiology/R/sun.data.R photobiology/R/spct.upgrade.R photobiology/R/calc.source.output.R photobiology/R/interpolate.spectrum.R photobiology/R/spct.summaries.R photobiology/R/spct.insert.spct.hinges.R photobiology/R/as.quantum.mol.R photobiology/R/defunct.R photobiology/R/oper.spectra.R photobiology/R/spct.transmittance.R photobiology/R/w.length.range2rgb.R photobiology/R/s.e.irrad2rgb.R photobiology/R/waveband.class.R photobiology/R/beesxyz.data.R
photobiology/R/object.data.r
photobiology/R/subt.spectra.R photobiology/R/spct.absorbance.R photobiology/R/photon.ratio.R photobiology/R/check.spectrum.R photobiology/R/print.waveband.R photobiology/R/spct.normalize.R photobiology/R/spct.ratios.R photobiology/R/sum.spectra.R photobiology/R/mspct.methods.R photobiology/R/photons.energy.ratio.R photobiology/R/copy.attr.R photobiology/R/normalize.range.arg.R photobiology/R/w.length2rgb.R
photobiology/vignettes
photobiology/vignettes/userguide-radiation.Rmd
photobiology/vignettes/userguide-astronomy.Rmd
photobiology/vignettes/userguide-intro.Rmd
photobiology/README.md
photobiology/MD5
photobiology/build
photobiology/build/vignette.rds
photobiology/DESCRIPTION
photobiology/man
photobiology/man/getBSWFUsed.Rd photobiology/man/setBSWFUsed.Rd photobiology/man/get_peaks.Rd photobiology/man/is_tagged.Rd photobiology/man/white_led.cps_spct.Rd photobiology/man/interpolate_spectrum.Rd photobiology/man/convertTimeUnit.Rd photobiology/man/q_fluence.Rd photobiology/man/is_normalized.Rd photobiology/man/integrate_spct.Rd photobiology/man/print.summary_generic_spct.Rd photobiology/man/A2T.Rd photobiology/man/trim_tails.Rd photobiology/man/mod-.generic_spct.Rd photobiology/man/smooth_spct.Rd photobiology/man/MathFun.Rd photobiology/man/setRfrType.Rd photobiology/man/clear.spct.Rd photobiology/man/calc_multipliers.Rd photobiology/man/white_body.spct.Rd photobiology/man/trimInstrDesc.Rd photobiology/man/shared_member_class.Rd photobiology/man/getMultipleWl.Rd photobiology/man/times-.generic_spct.Rd photobiology/man/filter_cps.mspct.Rd photobiology/man/resp_spct.Rd photobiology/man/transmittance.Rd photobiology/man/getInstrSettings.Rd photobiology/man/D2.UV654.Rd photobiology/man/split_photon_irradiance.Rd photobiology/man/q_response.Rd photobiology/man/print.solar_time.Rd photobiology/man/polyester.spct.Rd photobiology/man/is.summary_generic_spct.Rd photobiology/man/sun.daily.spct.Rd photobiology/man/plus-.generic_spct.Rd photobiology/man/tag.Rd photobiology/man/s_e_irrad2rgb.Rd photobiology/man/setInstrDesc.Rd photobiology/man/ciev2.spct.Rd photobiology/man/sun_angles.Rd photobiology/man/sum_spectra.Rd photobiology/man/getInstrDesc.Rd photobiology/man/q_ratio.Rd photobiology/man/format.solar_time.Rd photobiology/man/max.Rd photobiology/man/irrad.Rd photobiology/man/find_peaks.Rd photobiology/man/twilight2angle.Rd photobiology/man/setNormalized.Rd photobiology/man/stepsize.Rd photobiology/man/min.Rd photobiology/man/generic_mspct.Rd photobiology/man/ccd.spct.Rd photobiology/man/photobiology-package.Rd photobiology/man/round.Rd photobiology/man/e2quantum_multipliers.Rd photobiology/man/subset2mspct.Rd photobiology/man/clean.Rd photobiology/man/midpoint.Rd photobiology/man/trimInstrSettings.Rd photobiology/man/sun.spct.Rd photobiology/man/pow-.generic_spct.Rd photobiology/man/black_body.spct.Rd photobiology/man/setWhatMeasured.Rd photobiology/man/fshift.Rd photobiology/man/trim_waveband.Rd photobiology/man/waveband_ratio.Rd photobiology/man/getNormalized.Rd photobiology/man/average_spct.Rd photobiology/man/class_spct.Rd photobiology/man/getRfrType.Rd photobiology/man/as_quantum.Rd photobiology/man/clear_photobio.cache.Rd photobiology/man/tz_time_diff.Rd photobiology/man/subt_spectra.Rd photobiology/man/wb2spct.Rd photobiology/man/white_led.source_spct.Rd photobiology/man/isValidInstrSettings.Rd photobiology/man/A.illuminant.spct.Rd photobiology/man/convolve_each.Rd photobiology/man/julian_day.Rd photobiology/man/reflectance.Rd photobiology/man/v_insert_hinges.Rd photobiology/man/split_bands.Rd photobiology/man/clear_body.spct.Rd photobiology/man/mspct_classes.Rd photobiology/man/checkTimeUnit.Rd photobiology/man/checkSpctVersion.Rd photobiology/man/div-.generic_spct.Rd photobiology/man/l_insert_hinges.Rd photobiology/man/extract_mspct.Rd photobiology/man/is.old_spct.Rd photobiology/man/clip_wl.Rd photobiology/man/cps2irrad.Rd photobiology/man/fscale_spct.Rd photobiology/man/is.generic_mspct.Rd photobiology/man/fluence.Rd photobiology/man/day_night.Rd photobiology/man/setTfrType.Rd photobiology/man/D65.illuminant.spct.Rd photobiology/man/is_absorbance_based.Rd photobiology/man/f_dispatcher_spct.Rd photobiology/man/photons_energy_ratio.Rd photobiology/man/wb2tagged_spct.Rd photobiology/man/insert_hinges.Rd photobiology/man/solar_time.Rd photobiology/man/prod_spectra.Rd photobiology/man/is.solar_time.Rd photobiology/man/setWhenMeasured.Rd photobiology/man/getWhereMeasured.Rd photobiology/man/insert_spct_hinges.Rd photobiology/man/e2qmol_multipliers.Rd photobiology/man/setTimeUnit.Rd photobiology/man/labels.Rd photobiology/man/sun.daily.data.Rd photobiology/man/copy_attributes.Rd photobiology/man/getScaled.Rd photobiology/man/peaks.Rd photobiology/man/opaque.spct.Rd photobiology/man/rmDerivedSpct.Rd photobiology/man/FEL_spectrum.Rd photobiology/man/is.generic_spct.Rd photobiology/man/split_energy_irradiance.Rd photobiology/man/setGenericSpct.Rd photobiology/man/integrate_xy.Rd photobiology/man/setWhereMeasured.Rd photobiology/man/photon_ratio.Rd photobiology/man/energy_ratio.Rd photobiology/man/q_irrad.Rd photobiology/man/normalize_range_arg.Rd photobiology/man/clean_spct.Rd photobiology/man/wb2rect_spct.Rd photobiology/man/check_spct.Rd photobiology/man/is_effective.Rd photobiology/man/eq_ratio.Rd photobiology/man/calc_source_output.Rd photobiology/man/yellow_gel.spct.Rd photobiology/man/checkMspctVersion.Rd photobiology/man/q2e.Rd photobiology/man/as.solar_date.Rd photobiology/man/absorptance.Rd photobiology/man/e_irrad.Rd photobiology/man/e_ratio.Rd photobiology/man/summary_spct_classes.Rd photobiology/man/dim.generic_mspct.Rd photobiology/man/e_fluence.Rd photobiology/man/beesxyzCMF.spct.Rd photobiology/man/sign.Rd photobiology/man/setMultipleWl.Rd photobiology/man/merge.generic_spct.Rd photobiology/man/ciexyzCC10.spct.Rd photobiology/man/transmittance_spct.Rd photobiology/man/e2q.Rd photobiology/man/slash-.generic_spct.Rd photobiology/man/getWhenMeasured.Rd photobiology/man/rbindspct.Rd photobiology/man/irradiance.Rd photobiology/man/getMspctVersion.Rd photobiology/man/ciev10.spct.Rd photobiology/man/color.Rd photobiology/man/check_w.length.Rd photobiology/man/split2mspct.Rd photobiology/man/sun.data.Rd photobiology/man/Trig.Rd photobiology/man/FEL.BN.9101.165.Rd photobiology/man/is_photon_based.Rd photobiology/man/setScaled.Rd photobiology/man/interpolate_spct.Rd photobiology/man/waveband.Rd photobiology/man/fshift_spct.Rd photobiology/man/is.waveband.Rd photobiology/man/trim_spct.Rd photobiology/man/D2_spectrum.Rd photobiology/man/e_response.Rd photobiology/man/upgrade_spectra.Rd photobiology/man/rgb_spct.Rd photobiology/man/normalize.Rd photobiology/man/green_leaf.spct.Rd photobiology/man/upgrade_spct.Rd photobiology/man/getTimeUnit.Rd photobiology/man/absorbance_spct.Rd photobiology/man/msmsply.Rd photobiology/man/normalized_diff_ind.Rd photobiology/man/trim_wl.Rd photobiology/man/interpolate_wl.Rd photobiology/man/c.generic_mspct.Rd photobiology/man/print.waveband.Rd photobiology/man/photodiode.spct.Rd photobiology/man/ciexyzCMF2.spct.Rd photobiology/man/energy_irradiance.Rd photobiology/man/range.Rd photobiology/man/getSpctVersion.Rd photobiology/man/normalization.Rd photobiology/man/getTfrType.Rd photobiology/man/as.generic_mspct.Rd photobiology/man/ciexyzCMF10.spct.Rd photobiology/man/isValidInstrDesc.Rd photobiology/man/absorptance_spct.Rd photobiology/man/T2A.Rd photobiology/man/reflectance_spct.Rd photobiology/man/D2.UV653.Rd photobiology/man/as_quantum_mol.Rd photobiology/man/ciexyzCC2.spct.Rd photobiology/man/print.Rd photobiology/man/is_scaled.Rd photobiology/man/qe_ratio.Rd photobiology/man/w_length_range2rgb.Rd photobiology/man/check_spectrum.Rd photobiology/man/fscale.Rd photobiology/man/source_spct.Rd photobiology/man/rmDerivedMspct.Rd photobiology/man/split_irradiance.Rd photobiology/man/response.Rd photobiology/man/minus-.generic_spct.Rd photobiology/man/setInstrSettings.Rd photobiology/man/white_led.raw_spct.Rd photobiology/man/getWhatMeasured.Rd photobiology/man/extract.Rd photobiology/man/as_energy.Rd photobiology/man/spct_classes.Rd photobiology/man/photon_irradiance.Rd photobiology/man/w_length2rgb.Rd photobiology/man/as_tod.Rd photobiology/man/absorbance.Rd photobiology/man/summary.Rd photobiology/man/D2.UV586.Rd photobiology/man/as.generic_spct.Rd photobiology/man/log.Rd photobiology/man/div_spectra.Rd photobiology/man/untag.Rd photobiology/man/valleys.Rd photobiology/man/oper_spectra.Rd photobiology/man/defunct.Rd photobiology/man/spread.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.