check_spct: Check validity of spectral objects

In photobiology: Photobiological Calculations

Check validity of spectral objects

Description

Check that an R object contains the expected data members.

Usage

check_spct(x, byref, strict.range, force = FALSE, ...)

## Default S3 method:
check_spct(x, byref = FALSE, strict.range = NA, force = FALSE, ...)

## S3 method for class 'generic_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = NA,
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'calibration_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'raw_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'cps_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'filter_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'solute_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'reflector_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'object_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'response_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = NA,
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'source_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

## S3 method for class 'chroma_spct'
check_spct(
  x,
  byref = TRUE,
  strict.range = getOption("photobiology.strict.range", default = FALSE),
  force = FALSE,
  multiple.wl = getMultipleWl(x),
  ...
)

Arguments

x	An R object
byref	logical indicating if new object will be created by reference or by copy of x
strict.range	logical indicating whether off-range values result in an error instead of a warning, NA disables the test.
force	logical If TRUE check is done even if checks are disabled.
...	additional param possible in derived methods
multiple.wl	numeric Maximum number of repeated w.length entries with same value.

Methods (by class)

• check_spct(default): Default for generic function.

• check_spct(generic_spct): Specialization for generic_spct.

• check_spct(calibration_spct): Specialization for calibration_spct.

• check_spct(raw_spct): Specialization for raw_spct.

• check_spct(cps_spct): Specialization for cps_spct.

• check_spct(filter_spct): Specialization for filter_spct.

• check_spct(solute_spct): Specialization for solute_spct.

• check_spct(reflector_spct): Specialization for reflector_spct.

• check_spct(object_spct): Specialization for object_spct.

• check_spct(response_spct): Specialization for response_spct.

• check_spct(source_spct): Specialization for source_spct.

• check_spct(chroma_spct): Specialization for chroma_spct.

See Also

Other data validity check functions: check_spectrum(), check_w.length(), enable_check_spct()

Examples

check_spct(sun.spct)

check_spct(sun.spct)
# try(check_spct(-sun.spct))
# try(check_spct((sun.spct[1, "w.length"] <- 1000)))

photobiology documentation built on Oct. 21, 2023, 1:06 a.m.