photobiologyInOut: Read Spectral and Logged Data from Foreign Files

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Functions for reading and writing foreign files containing spectral data from spectrometers and their associated software, and output from simulation models in common use. As well as functions for exchange of spectral data with other R packages.

Author
Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Date of publication
2016-10-22 23:11:56
Maintainer
Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
License
GPL (>= 3)
Version
0.4.12
URLs

View on CRAN

Man pages

colorSpec2mspct
Convert 'colorSpec::colorSpec' objects
hyperSpec2mspct
Convert 'hyperSpec::hyperSpec' objects
mat2mspct
Convert a matrix into a collection of spectra
mspct2mat
Convert a collection of spectra into a matrix
photobiologyInOut-package
Read Spectral and Logged Data from Foreign Files
read_avaspec_csv
Read '.csv' File Saved by Avantes' Software for AvaSpec.
read_csi_dat
Read '.DAT' file(s) saved by modern Campbell Scientific...
read_fmi_cum
Read daily cummulated solar spectrum data file(s).
read_licor_prn
Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.
read_macam_dta
Read '.DTA' File Saved by Macam's Software.
read_oo_jazirrad
Read Absolute Irradiance File Saved by Ocean Optics' Jaz...
read_oo_pidata
Read File Saved by Ocean Optics' Raspberry Pi software.
read_oo_ssirrad
Read File Saved by Ocean Optics' SpectraSuite.
read_tuv_usrout
Read TUV output file.
read_uvspec_disort
Read libRadtran's uvspec output file.
read_uvspec_disort_vesa
Read libRadtran's uvspec output file from batch job.
rspec2mspct
Convert "pavo::rspec" objects

Files in this package

photobiologyInOut
photobiologyInOut/inst
photobiologyInOut/inst/staticdocs
photobiologyInOut/inst/staticdocs/README.md
photobiologyInOut/inst/staticdocs/index.r
photobiologyInOut/inst/CITATION
photobiologyInOut/inst/doc
photobiologyInOut/inst/doc/user-guide.Rnw
photobiologyInOut/inst/doc/user-guide.pdf
photobiologyInOut/inst/doc/user-guide.R
photobiologyInOut/tests
photobiologyInOut/tests/testthat.R
photobiologyInOut/tests/testthat
photobiologyInOut/tests/testthat/test-foreign.R
photobiologyInOut/tests/testthat/test-oo.R
photobiologyInOut/tests/testthat/test-fmi.R
photobiologyInOut/tests/testthat/test-macam.R
photobiologyInOut/tests/testthat/test-avantes.R
photobiologyInOut/tests/testthat/test-licor.R
photobiologyInOut/tests/testthat/data-test
photobiologyInOut/tests/testthat/data-test/spectrum-seq0.pi
photobiologyInOut/tests/testthat/data-test/spectrum-comma.JazIrrad
photobiologyInOut/tests/testthat/data-test/readr-read-table.txt
photobiologyInOut/tests/testthat/data-test/spectrum-comma.SSIrrad
photobiologyInOut/tests/testthat/data-test/spectrum.pi
photobiologyInOut/tests/testthat/data-test/spectrum-avaspec.csv
photobiologyInOut/tests/testthat/data-test/spectrum-seq-dark.pi
photobiologyInOut/tests/testthat/data-test/spectrum-licor-long.PRN
photobiologyInOut/tests/testthat/data-test/readr-read-table-2.txt
photobiologyInOut/tests/testthat/data-test/2014-08-22_cum.hel
photobiologyInOut/tests/testthat/data-test/spectrum.DTA
photobiologyInOut/tests/testthat/data-test/2014-08-21_cum.hel
photobiologyInOut/tests/testthat/data-test/spectrum.PRN
photobiologyInOut/tests/testthat/data-test/spectrum.jaz
photobiologyInOut/tests/testthat/data-test/spectrum.JazIrrad
photobiologyInOut/tests/testthat/data-test/spectrum.SSIrrad
photobiologyInOut/tests/testthat/data-test/spectrum-comma.jaz
photobiologyInOut/NAMESPACE
photobiologyInOut/NEWS
photobiologyInOut/R
photobiologyInOut/R/read-libradtran.r
photobiologyInOut/R/foreign-conversion.r
photobiologyInOut/R/read-oojaz-file.r
photobiologyInOut/R/read-tuv-file.r
photobiologyInOut/R/read-oopi-file.r
photobiologyInOut/R/photobiologyInOut.r
photobiologyInOut/R/read-macam-dta.r
photobiologyInOut/R/read-fmi-cum.R
photobiologyInOut/R/read-ooss-file.r
photobiologyInOut/R/read-csi-dat.r
photobiologyInOut/R/read-avaspec-csv.r
photobiologyInOut/R/read-licor-prn.r
photobiologyInOut/vignettes
photobiologyInOut/vignettes/user-guide.Rnw
photobiologyInOut/vignettes/data-vignettes
photobiologyInOut/vignettes/data-vignettes/uvspec-disort.dat
photobiologyInOut/vignettes/data-vignettes/spectrum-comma.JazIrrad
photobiologyInOut/vignettes/data-vignettes/spectrum-avaspec.csv
photobiologyInOut/vignettes/data-vignettes/uvspec-multi.dat
photobiologyInOut/vignettes/data-vignettes/cr6-hour.dat
photobiologyInOut/vignettes/data-vignettes/readr-bug.dat
photobiologyInOut/vignettes/data-vignettes/uvspec-disort.inp
photobiologyInOut/vignettes/data-vignettes/uvspec-plain-2col.dat
photobiologyInOut/vignettes/data-vignettes/2014-08-22_cum.hel
photobiologyInOut/vignettes/data-vignettes/spectrum.DTA
photobiologyInOut/vignettes/data-vignettes/2014-08-21_cum.hel
photobiologyInOut/vignettes/data-vignettes/spectrum.PRN
photobiologyInOut/vignettes/data-vignettes/spectrum.jaz
photobiologyInOut/vignettes/data-vignettes/spectrum.JazIrrad
photobiologyInOut/vignettes/data-vignettes/spectrum.SSIrrad
photobiologyInOut/vignettes/data-vignettes/usrout.txt
photobiologyInOut/vignettes/data-vignettes/cr6-day.dat
photobiologyInOut/vignettes/framed.sty
photobiologyInOut/vignettes/user-guide-concordance.tex
photobiologyInOut/README.md
photobiologyInOut/MD5
photobiologyInOut/build
photobiologyInOut/build/vignette.rds
photobiologyInOut/DESCRIPTION
photobiologyInOut/man
photobiologyInOut/man/read_csi_dat.Rd
photobiologyInOut/man/read_uvspec_disort.Rd
photobiologyInOut/man/rspec2mspct.Rd
photobiologyInOut/man/read_tuv_usrout.Rd
photobiologyInOut/man/colorSpec2mspct.Rd
photobiologyInOut/man/read_fmi_cum.Rd
photobiologyInOut/man/read_oo_pidata.Rd
photobiologyInOut/man/hyperSpec2mspct.Rd
photobiologyInOut/man/read_macam_dta.Rd
photobiologyInOut/man/read_oo_ssirrad.Rd
photobiologyInOut/man/read_oo_jazirrad.Rd
photobiologyInOut/man/photobiologyInOut-package.Rd
photobiologyInOut/man/mat2mspct.Rd
photobiologyInOut/man/read_avaspec_csv.Rd
photobiologyInOut/man/read_uvspec_disort_vesa.Rd
photobiologyInOut/man/read_licor_prn.Rd
photobiologyInOut/man/mspct2mat.Rd