photobiologyInOut: Read Spectral and Logged Data from Foreign Files
Version 0.4.13

Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages.

Browse man pages Browse package API and functions Browse package files

AuthorPedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Date of publication2017-03-20 17:34:55 UTC
MaintainerPedro J. Aphalo <pedro.aphalo@helsinki.fi>
LicenseGPL (>= 2)
Version0.4.13
URL http://www.r4photobiology.info/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("photobiologyInOut")

Man pages

colorSpec2mspct: Convert 'colorSpec::colorSpec' objects
hyperSpec2mspct: Convert 'hyperSpec::hyperSpec' objects
mat2mspct: Convert a matrix into a collection of spectra
mspct2mat: Convert a collection of spectra into a matrix
photobiologyInOut-package: photobiologyInOut: Read Spectral and Logged Data from Foreign...
read_ASTER_txt: Read File downloaded from ASTER data base.
read_avaspec_csv: Read '.csv' File Saved by Avantes' Software for AvaSpec.
read_csi_dat: Read '.DAT' file(s) saved by modern Campbell Scientific...
read_fmi_cum: Read daily cummulated solar spectrum data file(s).
read_FReD_csv: Read '.CSV' FReD database.
read_licor_prn: Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.
read_macam_dta: Read '.DTA' File Saved by Macam's Software.
read_oo_jazirrad: Read Absolute Irradiance File Saved by Ocean Optics' Jaz...
read_oo_pidata: Read File Saved by Ocean Optics' Raspberry Pi software.
read_oo_ssirrad: Read File Saved by Ocean Optics' SpectraSuite.
read_tuv_usrout: Read TUV output file.
read_uvspec_disort: Read libRadtran's uvspec output file.
read_uvspec_disort_vesa: Read libRadtran's uvspec output file from batch job.
rspec2mspct: Convert "pavo::rspec" objects

Functions

chroma_spct2colorSpec Man page Source code
colorSpec2chroma_spct Man page Source code
colorSpec2mspct Man page Source code
colorSpec2spct Man page Source code
hyperSpec2mspct Man page Source code
hyperSpec2spct Man page Source code
mat2mspct Man page Source code
mspct2colorSpec Man page Source code
mspct2hyperSpec Man page Source code
mspct2mat Man page Source code
photobiologyInOut Man page
photobiologyInOut-package Man page
read_ASTER_txt Man page Source code
read_FReD_csv Man page Source code
read_avaspec_csv Man page Source code
read_avaspec_xls Man page Source code
read_csi_dat Man page Source code
read_fmi_cum Man page Source code
read_licor_prn Man page Source code
read_m_fmi_cum Man page Source code
read_m_licor_prn Man page Source code
read_macam_dta Man page Source code
read_oo_jazdata Man page Source code
read_oo_jazirrad Man page Source code
read_oo_pidata Man page Source code
read_oo_ssdata Man page Source code
read_oo_ssirrad Man page Source code
read_tuv_usrout Man page Source code
read_uvspec_disort Man page Source code
read_uvspec_disort_vesa Man page Source code
rspec2mspct Man page Source code
rspec2spct Man page Source code
spct2colorSpec Man page Source code
spct2hyperSpec Man page Source code
starts_with Source code

Files

inst
inst/staticdocs
inst/staticdocs/README.md
inst/staticdocs/index.r
inst/CITATION
inst/extdata
inst/extdata/spectrum-seq0.pi
inst/extdata/uvspec-disort.dat
inst/extdata/spectrum-comma.JazIrrad
inst/extdata/readr-read-table.txt
inst/extdata/spectrum-comma.SSIrrad
inst/extdata/spectrum.pi
inst/extdata/spectrum-avaspec.csv
inst/extdata/uvspec-multi.dat
inst/extdata/cr6-hour.dat
inst/extdata/readr-bug.dat
inst/extdata/spectrum-seq-dark.pi
inst/extdata/uvspec-disort.inp
inst/extdata/reflectance.PRN
inst/extdata/spectrum-licor-long.PRN
inst/extdata/uvspec-plain-2col.dat
inst/extdata/readr-read-table-2.txt
inst/extdata/2014-08-22_cum.hel
inst/extdata/spectrum.DTA
inst/extdata/2014-08-21_cum.hel
inst/extdata/spectrum.PRN
inst/extdata/spectrum.jaz
inst/extdata/FReDflowerID_157.csv
inst/extdata/spectrum.JazIrrad
inst/extdata/spectrum.SSIrrad
inst/extdata/usrout.txt
inst/extdata/spectrum-comma.jaz
inst/extdata/cr6-day.dat
inst/extdata/drygrass-spectrum.txt
inst/doc
inst/doc/user-guide.Rnw
inst/doc/user-guide.pdf
inst/doc/user-guide.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test-foreign.R
tests/testthat/test-oo.R
tests/testthat/test-fmi.R
tests/testthat/test-macam.R
tests/testthat/test-fred.R
tests/testthat/test-avantes.R
tests/testthat/test-licor.R
tests/testthat/test-aster.R
NAMESPACE
NEWS
R
R/read-libradtran.r
R/foreign-conversion.r
R/read-oojaz-file.r
R/read-tuv-file.r
R/read-oopi-file.r
R/read-aster-file.r
R/photobiologyInOut.r
R/read-macam-dta.r
R/read-fmi-cum.R
R/read-ooss-file.r
R/read-fred-csv.r
R/read-csi-dat.r
R/read-avaspec-csv.r
R/read-licor-prn.r
vignettes
vignettes/user-guide.Rnw
vignettes/framed.sty
vignettes/user-guide-concordance.tex
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/read_csi_dat.Rd
man/read_uvspec_disort.Rd
man/rspec2mspct.Rd
man/read_tuv_usrout.Rd
man/colorSpec2mspct.Rd
man/read_fmi_cum.Rd
man/read_oo_pidata.Rd
man/hyperSpec2mspct.Rd
man/read_macam_dta.Rd
man/read_oo_ssirrad.Rd
man/read_oo_jazirrad.Rd
man/photobiologyInOut-package.Rd
man/mat2mspct.Rd
man/read_FReD_csv.Rd
man/read_avaspec_csv.Rd
man/read_uvspec_disort_vesa.Rd
man/read_ASTER_txt.Rd
man/read_licor_prn.Rd
man/mspct2mat.Rd
photobiologyInOut documentation built on May 19, 2017, 10:45 p.m.