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phylepic: Combined Visualisation of Phylogenetic and Epidemiological Data
A collection of utilities and 'ggplot2' extensions to assist with visualisations in genomic epidemiology. This includes the 'phylepic' chart, a visual combination of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions such as date axes binned by week are relevant for other applications in epidemiology and beyond. The approach is described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.
Getting started
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Package details |
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| Author | Carl Suster [aut, cre] (<https://orcid.org/0000-0001-7021-9380>), Western Sydney Local Health District, NSW Health [cph] |
| Maintainer | Carl Suster <Carl.Suster@health.nsw.gov.au> |
| License | MIT + file LICENSE |
| Version | 0.2.0 |
| URL | https://github.com/cidm-ph/phylepic https://cidm-ph.github.io/phylepic/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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