d.gen: Genetic distance matrix between vipers and lineages.

In phylin: Spatial Interpolation of Genetic Data

Description

This is a matrix of genetic distances between the Vipera latastei samples. The values are cophenetic distances generated from the phylogenetic tree.

Usage

data(d.gen)

Format

'd.gen' is a matrix with 58 rows and columns. Columns and rows are organized with the same order found in the 'vipers' dataset.

References

Velo-Anton G., Godinho R., Harris D. J. et al. (2012) Deep evolutionary lineages in a Western Mediterranean snake (Vipera latastei/monticola group) and high genetic structuring in Southern Iberian populations. Molecular phylogenetics and evolution, 65, 965–973.

Examples

data(d.gen)
hc <- hclust(as.dist(d.gen))
plot(hc, hang = -1, main="Vipers genetic distance tree", 
     xlab="Samples", cex=0.7)

Example output

phylin documentation built on Dec. 12, 2019, 5:07 p.m.