subtreeShow | R Documentation |
Plot a tree, highlighting the clade(s) descending from the given node(s)
subtreeShow( tree, nodeList, showNodeLabels = "nodeList", mainCol = "black", subtreeCol = "red", nodeLabelCol = "lightblue", ... )
tree |
a tree of class |
nodeList |
a list of one or more internal nodes in the tree. |
showNodeLabels |
option of whether to show node labels. Default is "nodeList", which only labels the nodes in |
mainCol |
colour for the edges which are not highlighted (default is black). |
subtreeCol |
colour for the edges which are highlighted (default is red). |
nodeLabelCol |
background colour for any node labels shown (default is light blue) |
... |
further arguments to be passed to plot.phylo |
A plot of the tree, with clade(s) descending from the given node(s) highlighted.
Michelle Kendall michelle.louise.kendall@gmail.com
## Highlight the clade(s) descending from nodes 23 and 35 in a random tree on 20 tips: tree <- rtree(20) subtreeShow(tree, nodeList=c(23,35)) # change aesthetics: subtreeShow(tree,nodeList=c(23,35), mainCol="navy", subtreeCol="cyan", nodeLabelCol="cyan", edge.width=2)
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