phylocurve: Phylogenetic Comparative Methods for High-Dimensional Traits

Tools for studying the evolution of high-dimensional traits (morphometric, function-valued, etc.) including ancestral state reconstruction, estimating phylogenetic signal, and assessing correlated trait evolution. Visit http://www.phylocurve.org for more information.

AuthorEric W. Goolsby
Date of publication2016-12-05 08:27:40
MaintainerEric W. Goolsby <eric.goolsby.evolution@gmail.com>
LicenseGPL (>= 2)
Version2.0.7
http://www.phylocurve.org

View on CRAN

Man pages

compare.models: Compare evolutionary hypotheses

evo.model: Fit an evolutionary model

fast.geomorph.compare.evol.rates: Fast covariance-based implementations of distance-based...

fast.geomorph.compare.multi.evol.rates: Fast covariance-based implementations of distance-based...

fast.geomorph.phylo.integration: Fast covariance-based implementations of distance-based...

fast.geomorph.physignal: Fast covariance-based implementations of distance-based...

fast.geomorph.procD.pgls: Fast covariance-based implementations of distance-based...

get.aligned.function.data: Estimate aligned data for function-valued traits

get.tip.coefficients: Estimate regression coefficients for tip species curves

GP.fit: Fit Gaussian process curves to species data

K.mult: Test phylogenetic signal (Kmult) using phylogenetic...

multipic: Efficient PIC algorithm for multiple traits

nonlinear.fit: Fit nonlinear curves to species data

paint.edges: Paint tree edges based on species regimes

phylocurve: Ancestral curve reconstruction for logistic regression (glm...

phylocurve.generalized: Align curves of any shape

phylocurve-package: Phylogenetic Comparative Methods for Function-Valued and...

phylocurve.trim: Trim aligned curves

polynomial.fit: Fit polynomial curves to species data using stepwise...

prep_multipic: Prep multipic

print.evo.model: Print evo.model

sim.curves: Simulate function-valued curve evolution

sim.traits: Simulate multivariate trait evolution

ultraFastAnc: Ultra-fast maximum likelihood ancestral state reconstruction

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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