Phylogenetic Comparative Methods for High-Dimensional Traits

compare.models | Compare evolutionary hypotheses |

evo.model | Fit an evolutionary model |

fast.geomorph.compare.evol.rates | Fast covariance-based implementations of distance-based... |

fast.geomorph.compare.multi.evol.rates | Fast covariance-based implementations of distance-based... |

fast.geomorph.phylo.integration | Fast covariance-based implementations of distance-based... |

fast.geomorph.physignal | Fast covariance-based implementations of distance-based... |

fast.geomorph.procD.pgls | Fast covariance-based implementations of distance-based... |

get.aligned.function.data | Estimate aligned data for function-valued traits |

get.tip.coefficients | Estimate regression coefficients for tip species curves |

GP.fit | Fit Gaussian process curves to species data |

K.mult | Test phylogenetic signal (Kmult) using phylogenetic... |

multipic | Efficient PIC algorithm for multiple traits |

nonlinear.fit | Fit nonlinear curves to species data |

paint.edges | Paint tree edges based on species regimes |

phylocurve | Ancestral curve reconstruction for logistic regression (glm... |

phylocurve.generalized | Align curves of any shape |

phylocurve-package | Phylogenetic Comparative Methods for Function-Valued and... |

phylocurve.trim | Trim aligned curves |

polynomial.fit | Fit polynomial curves to species data using stepwise... |

prep_multipic | Prep multipic |

print.evo.model | Print evo.model |

sim.curves | Simulate function-valued curve evolution |

sim.traits | Simulate multivariate trait evolution |

ultraFastAnc | Ultra-fast maximum likelihood ancestral state reconstruction |

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