plot_test_network: Plots the graph used for testing
In phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data
View source: R/graphtest-functions.R
plot_test_network R Documentation
Plots the graph used for testing
Description
When using the graph_perm_test function, a graph is created. This
function will plot the graph used for testing with nodes colored by
sample type and edges marked as pure or mixed.
Usage
plot_test_network(graphtest)
Arguments
graphtest
The output from graph_perm_test.
Value
A ggplot object created by ggnetwork.
Examples
library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_test_network(gt)
phyloseqGraphTest documentation built on May 29, 2024, 11:23 a.m.
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View source: R/graphtest-functions.R
| plot_test_network | R Documentation |
Plots the graph used for testing
Description
When using the graph_perm_test function, a graph is created. This function will plot the graph used for testing with nodes colored by sample type and edges marked as pure or mixed.
Usage
plot_test_network(graphtest)
Arguments
graphtest |
The output from graph_perm_test. |
Value
A ggplot object created by ggnetwork.
Examples
library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_test_network(gt)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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