plot_test_network: Plots the graph used for testing
In phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data
Description
Usage
Arguments
Value
Examples
View source: R/graphtest-functions.R
Description
When using the graph_perm_test function, a graph is created. This
function will plot the graph used for testing with nodes colored by
sample type and edges marked as pure or mixed.
Usage
1
plot_test_network(graphtest)
Arguments
graphtest
The output from graph_perm_test.
Value
A ggplot object created by ggnetwork.
Examples
1
2
3
4
library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_test_network(gt)
phyloseqGraphTest documentation built on Feb. 7, 2020, 5:07 p.m.
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Description Usage Arguments Value Examples
View source: R/graphtest-functions.R
Description
When using the graph_perm_test function, a graph is created. This function will plot the graph used for testing with nodes colored by sample type and edges marked as pure or mixed.
Usage
1 | plot_test_network(graphtest)
|
Arguments
graphtest |
The output from graph_perm_test. |
Value
A ggplot object created by ggnetwork.
Examples
1 2 3 4 | library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_test_network(gt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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