phyndr: Matches Tip and Trait Data

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Use topological or taxonomic information to maximize the overlap of phylogenetic and comparative data.

Author
Rich FitzJohn, Matt Pennell and Will Cornwell
Date of publication
2015-08-18 21:04:16
Maintainer
Matt Pennell <mwpennell@gmail.com>
License
BSD_2_clause + file LICENSE
Version
0.1.0

View on CRAN

Man pages

phyndr_combn
Generate all distinct sets of tip labels from a phyndr tree
phyndr_n_distinct
Number of distinct trees
phyndr_sample
Sample one distinct set of tip labels from a phyndr tree
phyndr_taxonomy
Phyndr taxonomic
phyndr_topology
phyndr for topo trees

Files in this package

phyndr
phyndr/tests
phyndr/tests/testthat.R
phyndr/tests/testthat
phyndr/tests/testthat/test-utils.R
phyndr/tests/testthat/pinales.tre
phyndr/tests/testthat/test-phyndr-topology.R
phyndr/tests/testthat/helper-phyndr.R
phyndr/tests/testthat/Conifer-timetree.tre
phyndr/tests/testthat/test-phyndr-taxonomy.R
phyndr/tests/testthat/pinales_topotree.tre
phyndr/tests/testthat/pinales_sub.txt
phyndr/tests/testthat/pinales.csv
phyndr/src
phyndr/src/descendants.c
phyndr/NAMESPACE
phyndr/R
phyndr/R/utils.R
phyndr/R/utils_phy.R
phyndr/R/phyndr.R
phyndr/R/phyndr_taxonomy.R
phyndr/R/utils_phy_diversitree.R
phyndr/R/drop_tip.R
phyndr/R/phyndr_topology.R
phyndr/README.md
phyndr/MD5
phyndr/DESCRIPTION
phyndr/man
phyndr/man/phyndr_n_distinct.Rd
phyndr/man/phyndr_sample.Rd
phyndr/man/phyndr_taxonomy.Rd
phyndr/man/phyndr_topology.Rd
phyndr/man/phyndr_combn.Rd
phyndr/LICENSE