phyreg: Implements the Phylogenetic Regression of Grafen (1989)

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Provides general linear model facilities (single y-variable, multiple x-variables with arbitrary mixture of continuous and categorical and arbitrary interactions) for cross-species data. The theory is in A. Grafen (1989, Proc. R. Soc. B 326, 119-157) and aims to cope with both recognised phylogeny (closely related species tend to be similar) and unrecognised phylogeny (a polytomy usually indicates ignorance about the true sequence of binary splits).

Author
Alan Grafen
Date of publication
2014-02-08 11:18:34
Maintainer
Alan Grafen <alan.grafen@sjc.ox.ac.uk>
License
GPL-2 | GPL-3
Version
0.7

View on CRAN

Man pages

inf
Provides information about the stored output of a call to...
myd0
Example data
phyfromnewick
Using phylogenies formatted in standard but "other" ways
phyreg
Performs a phylogenetic regression
phyreg-package
The Phylogenetic Regression of Grafen (1989)
printparms
Prints the current parameter values for 'phyreg'
who
Identifying higher nodes in an internal-format phylogeny

Files in this package

phyreg
phyreg/NAMESPACE
phyreg/data
phyreg/data/exphylo.rda
phyreg/data/myd0.rda
phyreg/data/myd2.rda
phyreg/data/myd1.rda
phyreg/data/myd3.rda
phyreg/data/newickstr.rda
phyreg/data/extax.rda
phyreg/R
phyreg/R/uw.R
phyreg/R/mrca.R
phyreg/R/phyfromnewick.R
phyreg/R/phyfromphylo.R
phyreg/R/inf.R
phyreg/R/opsi.R
phyreg/R/phyreg.R
phyreg/R/who.R
phyreg/R/printparms.R
phyreg/MD5
phyreg/DESCRIPTION
phyreg/man
phyreg/man/who.Rd
phyreg/man/inf.Rd
phyreg/man/printparms.Rd
phyreg/man/phyreg.Rd
phyreg/man/myd0.Rd
phyreg/man/phyreg-package.Rd
phyreg/man/phyfromnewick.Rd