factory_default: Default settings for "minor" parameters
In phyreg: The Phylogenetic Regression of Grafen (1989)

Description Usage Details Author(s) See Also

These functions change the effect of including reset=TRUE as an argument to phyreg(). After a call of factory_default(), the reset will be to the original values hard-wired in the package's code. If you call new_default(), the values of the minor parameters in place at that moment become the reset values for all uses of reset=TRUE until a future call of one of these functions.

1 2	factory_default() new_default()

The unstored, major, parameters are the control and test parameters, and the data parameters, namely data, phydata, taxmatrix and heightsdata. The remaining parameters are minor. All the parameters are listed under phyreg, and examples of use are also given there. Note that changing a parameter whether major or minor leaves the newly set value of that parameter as the default for future calls of phyreg() until either the parameter is changed again, or reset=TRUE is included as an argument of phyreg().