mirrors: Setting Mirrors and Repositories

In pkgmaker: Development Utilities for R Packages

Setting Mirrors and Repositories

Description

setBiocMirror sets all Bioconductor repositories (software, data, annotation, etc.). so that they are directly available to install.packages. It differs from chooseBioCmirror in that it effectively enables the repositories.

Usage

setBiocMirror(
  url = "http://www.bioconductor.org",
  version = NULL,
  unique = TRUE
)

getBiocMirror()

getBiocRepos(url = "http://www.bioconductor.org", version = NULL)

setCRANMirror(url = CRAN, unique = TRUE)

Arguments

url	or Bioconductor mirror url
version	version number
unique	logical that indicate if duplicated urls or names should be removed.

Value

setBiocMirror returns the old set of Bioc repositories.

Functions

• getBiocMirror(): is a shortcut for getOption('BioC_mirror'), which returns the current Bioconductor mirror as used by biocLite.

• getBiocRepos(): returns urls to all Bioconductor repositories on a given mirror.

• setCRANMirror(): sets the preferred CRAN mirror.

pkgmaker documentation built on May 3, 2023, 5:08 p.m.