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Reads/write binary genotype file compatible with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.
Package details |
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Author | Xiaoran Tong [aut, cre] |
Maintainer | Xiaoran Tong <xiaoran.tong.cn@gmail.com> |
License | GPL (>= 2) |
Version | 0.2.1 |
Package repository | View on CRAN |
Installation |
Install the latest version of this package by entering the following in R:
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