Man pages for plinkFile
'PLINK' (and 'GCTA') File Helpers
| bed | travers variants in a PLINK1 BED fileset |
| CHR | A dictionary to map chromosome names to integers. |
| DBT | A decoding byte table to map raw intergers to genotype... |
| readBED | Read BED file |
| readBIM | Read BIM file |
| readBSM | Read Binary Symmetric Matrix (BSM) |
| readFAM | Read FAM file |
| readGRM | Read Genetic Related Matrix (GRM) of GCTA |
| readIBS | Read PLINK Binary IBS matrix |
| readIID | read individual ID |
| readREL | Read PLINK Binary REL matrix |
| readVCM | Read Variant Count Matrix (VCM) accompanying a GCTA GRM |
| readVID | read variant ID |
| saveBED | Save BED file |
| saveBSM | Save Symmetric Matrix to Binary |
| saveGRM | Save symmetic matrix to GCTA GRM format. |
| testReadBED | Test BED Reader |
| testReadBSM | Test Genetic Relatedness Matrix Reader |
