plmDE: Additive partially linear models for differential gene expression analysis

A set of tools for identifying genes whose differential expression is associated with measurements of other covariates on a continuous scale. These methods rely on generalized additive partially linear models which can be fitted efficiently using a B-spline basis approximation. Still under development: methods for interfacing with objects extending the eSet class and a function to pass linear models in edgeR and DEseq format.

AuthorJonas Mueller
Date of publication2012-05-09 04:06:58
MaintainerJonas <jonasmueller303@hotmail.com>
LicenseGPL (>= 2)
Version1.0

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