plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques

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Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.

Author
Frederic Bertrand <frederic.bertrand@math.unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>.
Date of publication
2014-12-17 16:18:31
Maintainer
Frederic Bertrand <frederic.bertrand@math.unistra.fr>
License
GPL-3
Version
1.7.2
URLs

View on CRAN

Man pages

coxDKpls2DR
Fitting a Direct Kernel PLS model on the (Deviance) Residuals
coxDKplsDR
Fitting a Direct Kernel PLS model on the (Deviance) Residuals
coxDKsplsDR
Fitting a Direct Kernel sPLSR model on the (Deviance)...
coxpls
Fitting a Cox-Model on PLSR components
coxpls2
Fitting a Cox-Model on PLSR components
coxpls2DR
Fitting a PLSR model on the (Deviance) Residuals
coxpls3
Fitting a Cox-Model on PLSR components
coxpls3DR
Fitting a PLSR model on the (Deviance) Residuals
coxplsDR
Fitting a PLSR model on the (Deviance) Residuals
coxsplsDR
Fitting a sPLSR model on the (Deviance) Residuals
cv.autoplsRcox
Cross-validating an autoplsRcox-Model
cv.coxDKplsDR
Cross-validating a DKplsDR-Model
cv.coxDKsplsDR
Cross-validating a DKsplsDR-Model
cv.coxpls
Cross-validating a Cox-Model fitted on PLSR components
cv.coxplsDR
Cross-validating a plsDR-Model
cv.coxsplsDR
Cross-validating a splsDR-Model
cv.larsDR
Cross-validating a larsDR-Model
cv.plsRcox
Cross-validating a plsRcox-Model
DKplsRcox
Partial least squares Regression generalized linear models
DR_coxph
(Deviance) Residuals Computation
internal-plsRcox
Internal plsRcox functions
larsDR_coxph
Fitting a LASSO/LARS model on the (Deviance) Residuals
micro.censure
Microsat features and survival times
plsRcox
Partial least squares Regression generalized linear models
predict.plsRcoxmodel
Print method for plsRcox models
print.plsRcoxmodel
Print method for plsRcox models
print.summary.plsRcoxmodel
Print method for summaries of plsRcox models
summary.plsRcoxmodel
Summary method for plsRcox models
Xmicro.censure_compl_imp
Imputed Microsat features

Files in this package

plsRcox
plsRcox/inst
plsRcox/inst/CITATION
plsRcox/NAMESPACE
plsRcox/NEWS
plsRcox/data
plsRcox/data/micro.censure.RData
plsRcox/data/Xmicro.censure_compl_imp.RData
plsRcox/R
plsRcox/R/coxplsDR.formula.R
plsRcox/R/coxpls.default.R
plsRcox/R/DR_coxph.R
plsRcox/R/cv.coxsplsDR.R
plsRcox/R/cv.autoplsRcox.R
plsRcox/R/coxpls.R
plsRcox/R/coxDKplsDR.formula.R
plsRcox/R/coxDKpls2DR.default.R
plsRcox/R/cv.plsRcox.R
plsRcox/R/internal-plsRcox.R
plsRcox/R/cv.larsDR.R
plsRcox/R/coxpls2DR.R
plsRcox/R/coxDKpls2DR.R
plsRcox/R/cv.coxDKsplsDR.R
plsRcox/R/cv.coxpls.R
plsRcox/R/coxDKpls2DR.formula.R
plsRcox/R/coxpls3.default.R
plsRcox/R/larsDR_coxph.default.R
plsRcox/R/plsRcoxmodel.default.R
plsRcox/R/coxpls3DR.R
plsRcox/R/print.plsRcoxmodel.R
plsRcox/R/DKplsRcox.R
plsRcox/R/coxpls3DR.formula.R
plsRcox/R/plsRcoxmodel.formula.R
plsRcox/R/coxDKplsDR.default.R
plsRcox/R/summary.plsRcoxmodel.R
plsRcox/R/coxpls3.formula.R
plsRcox/R/coxDKsplsDR.default.R
plsRcox/R/larsDR_coxph.formula.R
plsRcox/R/larsDR_coxph.R
plsRcox/R/print.summary.plsRcoxmodel.R
plsRcox/R/coxsplsDR.formula.R
plsRcox/R/coxpls2.formula.R
plsRcox/R/coxpls3DR.default.R
plsRcox/R/plsRcox.R
plsRcox/R/predict.plsRcoxmodel.R
plsRcox/R/coxplsDR.R
plsRcox/R/coxpls3.R
plsRcox/R/coxDKsplsDR.formula.R
plsRcox/R/coxplsDR.default.R
plsRcox/R/coxpls2.R
plsRcox/R/coxsplsDR.default.R
plsRcox/R/coxpls2DR.formula.R
plsRcox/R/coxDKplsDR.R
plsRcox/R/coxpls2.default.R
plsRcox/R/cv.coxDKplsDR.R
plsRcox/R/coxpls2DR.default.R
plsRcox/R/coxDKsplsDR.R
plsRcox/R/DKplsRcoxmodel.formula.R
plsRcox/R/cv.coxplsDR.R
plsRcox/R/coxsplsDR.R
plsRcox/R/DKplsRcoxmodel.default.R
plsRcox/R/coxpls.formula.R
plsRcox/MD5
plsRcox/DESCRIPTION
plsRcox/man
plsRcox/man/cv.coxsplsDR.Rd
plsRcox/man/coxDKpls2DR.Rd
plsRcox/man/coxpls.Rd
plsRcox/man/cv.coxpls.Rd
plsRcox/man/coxpls2.Rd
plsRcox/man/coxsplsDR.Rd
plsRcox/man/predict.plsRcoxmodel.Rd
plsRcox/man/coxDKplsDR.Rd
plsRcox/man/micro.censure.Rd
plsRcox/man/larsDR_coxph.Rd
plsRcox/man/cv.larsDR.Rd
plsRcox/man/cv.coxplsDR.Rd
plsRcox/man/coxDKsplsDR.Rd
plsRcox/man/coxplsDR.Rd
plsRcox/man/coxpls3.Rd
plsRcox/man/DR_coxph.Rd
plsRcox/man/coxpls2DR.Rd
plsRcox/man/coxpls3DR.Rd
plsRcox/man/print.plsRcoxmodel.Rd
plsRcox/man/print.summary.plsRcoxmodel.Rd
plsRcox/man/cv.plsRcox.Rd
plsRcox/man/summary.plsRcoxmodel.Rd
plsRcox/man/Xmicro.censure_compl_imp.Rd
plsRcox/man/plsRcox.Rd
plsRcox/man/DKplsRcox.Rd
plsRcox/man/cv.coxDKsplsDR.Rd
plsRcox/man/cv.autoplsRcox.Rd
plsRcox/man/internal-plsRcox.Rd
plsRcox/man/cv.coxDKplsDR.Rd