plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques

Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>.
Date of publication2014-12-17 16:18:31
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.7.2
http://www-irma.u-strasbg.fr/~fbertran/

View on CRAN

Man pages

coxDKpls2DR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals

coxDKplsDR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals

coxDKsplsDR: Fitting a Direct Kernel sPLSR model on the (Deviance)...

coxpls: Fitting a Cox-Model on PLSR components

coxpls2: Fitting a Cox-Model on PLSR components

coxpls2DR: Fitting a PLSR model on the (Deviance) Residuals

coxpls3: Fitting a Cox-Model on PLSR components

coxpls3DR: Fitting a PLSR model on the (Deviance) Residuals

coxplsDR: Fitting a PLSR model on the (Deviance) Residuals

coxsplsDR: Fitting a sPLSR model on the (Deviance) Residuals

cv.autoplsRcox: Cross-validating an autoplsRcox-Model

cv.coxDKplsDR: Cross-validating a DKplsDR-Model

cv.coxDKsplsDR: Cross-validating a DKsplsDR-Model

cv.coxpls: Cross-validating a Cox-Model fitted on PLSR components

cv.coxplsDR: Cross-validating a plsDR-Model

cv.coxsplsDR: Cross-validating a splsDR-Model

cv.larsDR: Cross-validating a larsDR-Model

cv.plsRcox: Cross-validating a plsRcox-Model

DKplsRcox: Partial least squares Regression generalized linear models

DR_coxph: (Deviance) Residuals Computation

internal-plsRcox: Internal plsRcox functions

larsDR_coxph: Fitting a LASSO/LARS model on the (Deviance) Residuals

micro.censure: Microsat features and survival times

plsRcox: Partial least squares Regression generalized linear models

predict.plsRcoxmodel: Print method for plsRcox models

print.plsRcoxmodel: Print method for plsRcox models

print.summary.plsRcoxmodel: Print method for summaries of plsRcox models

summary.plsRcoxmodel: Summary method for plsRcox models

Xmicro.censure_compl_imp: Imputed Microsat features

Functions

correctp.cox Man page
coxDKpls2DR Man page
coxDKpls2DR.default Man page
coxDKpls2DR.formula Man page
coxDKplsDR Man page
coxDKplsDR.default Man page
coxDKplsDR.formula Man page
coxDKsplsDR Man page
coxDKsplsDR.default Man page
coxDKsplsDR.formula Man page
coxpls Man page
coxpls2 Man page
coxpls2.default Man page
coxpls2DR Man page
coxpls2DR.default Man page
coxpls2DR.formula Man page
coxpls2.formula Man page
coxpls3 Man page
coxpls3.default Man page
coxpls3DR Man page
coxpls3DR.default Man page
coxpls3DR.formula Man page
coxpls3.formula Man page
coxpls.default Man page
coxplsDR Man page
coxplsDR.default Man page
coxplsDR.formula Man page
coxpls.formula Man page
coxsplsDR Man page
coxsplsDR.default Man page
coxsplsDR.formula Man page
cv.autoplsRcox Man page
cv.coxDKplsDR Man page
cv.coxDKsplsDR Man page
cv.coxpls Man page
cv.coxplsDR Man page
cv.coxsplsDR Man page
cv.larsDR Man page
cv.plsRcox Man page
DKplsRcox Man page
DKplsRcoxmodel.default Man page
DKplsRcoxmodel.formula Man page
DR_coxph Man page
getIndic Man page
getIndicCV Man page
getIndicCViAUCSH Man page
getIndicCViAUCSurvROCTest Man page
larsDR_coxph Man page
larsDR_coxph.default Man page
larsDR_coxph.formula Man page
micro.censure Man page
pls.cox Man page
plsRcox Man page
plsRcoxmodel.default Man page
plsRcoxmodel.formula Man page
predict.pls.cox Man page
predict.plsRcoxmodel Man page
print.plsRcoxmodel Man page
print.summary.plsRcoxmodel Man page
spls.cox Man page
spls.dv Man page
summary.plsRcoxmodel Man page
ust Man page
Xmicro.censure_compl_imp Man page

Files

plsRcox
plsRcox/inst
plsRcox/inst/CITATION
plsRcox/NAMESPACE
plsRcox/NEWS
plsRcox/data
plsRcox/data/micro.censure.RData
plsRcox/data/Xmicro.censure_compl_imp.RData
plsRcox/R
plsRcox/R/coxplsDR.formula.R plsRcox/R/coxpls.default.R plsRcox/R/DR_coxph.R plsRcox/R/cv.coxsplsDR.R plsRcox/R/cv.autoplsRcox.R plsRcox/R/coxpls.R plsRcox/R/coxDKplsDR.formula.R plsRcox/R/coxDKpls2DR.default.R plsRcox/R/cv.plsRcox.R plsRcox/R/internal-plsRcox.R plsRcox/R/cv.larsDR.R plsRcox/R/coxpls2DR.R plsRcox/R/coxDKpls2DR.R plsRcox/R/cv.coxDKsplsDR.R plsRcox/R/cv.coxpls.R plsRcox/R/coxDKpls2DR.formula.R plsRcox/R/coxpls3.default.R plsRcox/R/larsDR_coxph.default.R plsRcox/R/plsRcoxmodel.default.R plsRcox/R/coxpls3DR.R plsRcox/R/print.plsRcoxmodel.R plsRcox/R/DKplsRcox.R plsRcox/R/coxpls3DR.formula.R plsRcox/R/plsRcoxmodel.formula.R plsRcox/R/coxDKplsDR.default.R plsRcox/R/summary.plsRcoxmodel.R plsRcox/R/coxpls3.formula.R plsRcox/R/coxDKsplsDR.default.R plsRcox/R/larsDR_coxph.formula.R plsRcox/R/larsDR_coxph.R plsRcox/R/print.summary.plsRcoxmodel.R plsRcox/R/coxsplsDR.formula.R plsRcox/R/coxpls2.formula.R plsRcox/R/coxpls3DR.default.R plsRcox/R/plsRcox.R plsRcox/R/predict.plsRcoxmodel.R plsRcox/R/coxplsDR.R plsRcox/R/coxpls3.R plsRcox/R/coxDKsplsDR.formula.R plsRcox/R/coxplsDR.default.R plsRcox/R/coxpls2.R plsRcox/R/coxsplsDR.default.R plsRcox/R/coxpls2DR.formula.R plsRcox/R/coxDKplsDR.R plsRcox/R/coxpls2.default.R plsRcox/R/cv.coxDKplsDR.R plsRcox/R/coxpls2DR.default.R plsRcox/R/coxDKsplsDR.R plsRcox/R/DKplsRcoxmodel.formula.R plsRcox/R/cv.coxplsDR.R plsRcox/R/coxsplsDR.R plsRcox/R/DKplsRcoxmodel.default.R plsRcox/R/coxpls.formula.R
plsRcox/MD5
plsRcox/DESCRIPTION
plsRcox/man
plsRcox/man/cv.coxsplsDR.Rd plsRcox/man/coxDKpls2DR.Rd plsRcox/man/coxpls.Rd plsRcox/man/cv.coxpls.Rd plsRcox/man/coxpls2.Rd plsRcox/man/coxsplsDR.Rd plsRcox/man/predict.plsRcoxmodel.Rd plsRcox/man/coxDKplsDR.Rd plsRcox/man/micro.censure.Rd plsRcox/man/larsDR_coxph.Rd plsRcox/man/cv.larsDR.Rd plsRcox/man/cv.coxplsDR.Rd plsRcox/man/coxDKsplsDR.Rd plsRcox/man/coxplsDR.Rd plsRcox/man/coxpls3.Rd plsRcox/man/DR_coxph.Rd plsRcox/man/coxpls2DR.Rd plsRcox/man/coxpls3DR.Rd plsRcox/man/print.plsRcoxmodel.Rd plsRcox/man/print.summary.plsRcoxmodel.Rd plsRcox/man/cv.plsRcox.Rd plsRcox/man/summary.plsRcoxmodel.Rd plsRcox/man/Xmicro.censure_compl_imp.Rd plsRcox/man/plsRcox.Rd plsRcox/man/DKplsRcox.Rd plsRcox/man/cv.coxDKsplsDR.Rd plsRcox/man/cv.autoplsRcox.Rd plsRcox/man/internal-plsRcox.Rd plsRcox/man/cv.coxDKplsDR.Rd

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