plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques

Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>.
Date of publication2014-12-17 16:18:31
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.7.2
http://www-irma.u-strasbg.fr/~fbertran/

View on CRAN

Man pages

coxDKpls2DR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals

coxDKplsDR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals

coxDKsplsDR: Fitting a Direct Kernel sPLSR model on the (Deviance)...

coxpls: Fitting a Cox-Model on PLSR components

coxpls2: Fitting a Cox-Model on PLSR components

coxpls2DR: Fitting a PLSR model on the (Deviance) Residuals

coxpls3: Fitting a Cox-Model on PLSR components

coxpls3DR: Fitting a PLSR model on the (Deviance) Residuals

coxplsDR: Fitting a PLSR model on the (Deviance) Residuals

coxsplsDR: Fitting a sPLSR model on the (Deviance) Residuals

cv.autoplsRcox: Cross-validating an autoplsRcox-Model

cv.coxDKplsDR: Cross-validating a DKplsDR-Model

cv.coxDKsplsDR: Cross-validating a DKsplsDR-Model

cv.coxpls: Cross-validating a Cox-Model fitted on PLSR components

cv.coxplsDR: Cross-validating a plsDR-Model

cv.coxsplsDR: Cross-validating a splsDR-Model

cv.larsDR: Cross-validating a larsDR-Model

cv.plsRcox: Cross-validating a plsRcox-Model

DKplsRcox: Partial least squares Regression generalized linear models

DR_coxph: (Deviance) Residuals Computation

internal-plsRcox: Internal plsRcox functions

larsDR_coxph: Fitting a LASSO/LARS model on the (Deviance) Residuals

micro.censure: Microsat features and survival times

plsRcox: Partial least squares Regression generalized linear models

predict.plsRcoxmodel: Print method for plsRcox models

print.plsRcoxmodel: Print method for plsRcox models

print.summary.plsRcoxmodel: Print method for summaries of plsRcox models

summary.plsRcoxmodel: Summary method for plsRcox models

Xmicro.censure_compl_imp: Imputed Microsat features

Files in this package

plsRcox
plsRcox/inst
plsRcox/inst/CITATION
plsRcox/NAMESPACE
plsRcox/NEWS
plsRcox/data
plsRcox/data/micro.censure.RData
plsRcox/data/Xmicro.censure_compl_imp.RData
plsRcox/R
plsRcox/R/coxplsDR.formula.R plsRcox/R/coxpls.default.R plsRcox/R/DR_coxph.R plsRcox/R/cv.coxsplsDR.R plsRcox/R/cv.autoplsRcox.R plsRcox/R/coxpls.R plsRcox/R/coxDKplsDR.formula.R plsRcox/R/coxDKpls2DR.default.R plsRcox/R/cv.plsRcox.R plsRcox/R/internal-plsRcox.R plsRcox/R/cv.larsDR.R plsRcox/R/coxpls2DR.R plsRcox/R/coxDKpls2DR.R plsRcox/R/cv.coxDKsplsDR.R plsRcox/R/cv.coxpls.R plsRcox/R/coxDKpls2DR.formula.R plsRcox/R/coxpls3.default.R plsRcox/R/larsDR_coxph.default.R plsRcox/R/plsRcoxmodel.default.R plsRcox/R/coxpls3DR.R plsRcox/R/print.plsRcoxmodel.R plsRcox/R/DKplsRcox.R plsRcox/R/coxpls3DR.formula.R plsRcox/R/plsRcoxmodel.formula.R plsRcox/R/coxDKplsDR.default.R plsRcox/R/summary.plsRcoxmodel.R plsRcox/R/coxpls3.formula.R plsRcox/R/coxDKsplsDR.default.R plsRcox/R/larsDR_coxph.formula.R plsRcox/R/larsDR_coxph.R plsRcox/R/print.summary.plsRcoxmodel.R plsRcox/R/coxsplsDR.formula.R plsRcox/R/coxpls2.formula.R plsRcox/R/coxpls3DR.default.R plsRcox/R/plsRcox.R plsRcox/R/predict.plsRcoxmodel.R plsRcox/R/coxplsDR.R plsRcox/R/coxpls3.R plsRcox/R/coxDKsplsDR.formula.R plsRcox/R/coxplsDR.default.R plsRcox/R/coxpls2.R plsRcox/R/coxsplsDR.default.R plsRcox/R/coxpls2DR.formula.R plsRcox/R/coxDKplsDR.R plsRcox/R/coxpls2.default.R plsRcox/R/cv.coxDKplsDR.R plsRcox/R/coxpls2DR.default.R plsRcox/R/coxDKsplsDR.R plsRcox/R/DKplsRcoxmodel.formula.R plsRcox/R/cv.coxplsDR.R plsRcox/R/coxsplsDR.R plsRcox/R/DKplsRcoxmodel.default.R plsRcox/R/coxpls.formula.R
plsRcox/MD5
plsRcox/DESCRIPTION
plsRcox/man
plsRcox/man/cv.coxsplsDR.Rd plsRcox/man/coxDKpls2DR.Rd plsRcox/man/coxpls.Rd plsRcox/man/cv.coxpls.Rd plsRcox/man/coxpls2.Rd plsRcox/man/coxsplsDR.Rd plsRcox/man/predict.plsRcoxmodel.Rd plsRcox/man/coxDKplsDR.Rd plsRcox/man/micro.censure.Rd plsRcox/man/larsDR_coxph.Rd plsRcox/man/cv.larsDR.Rd plsRcox/man/cv.coxplsDR.Rd plsRcox/man/coxDKsplsDR.Rd plsRcox/man/coxplsDR.Rd plsRcox/man/coxpls3.Rd plsRcox/man/DR_coxph.Rd plsRcox/man/coxpls2DR.Rd plsRcox/man/coxpls3DR.Rd plsRcox/man/print.plsRcoxmodel.Rd plsRcox/man/print.summary.plsRcoxmodel.Rd plsRcox/man/cv.plsRcox.Rd plsRcox/man/summary.plsRcoxmodel.Rd plsRcox/man/Xmicro.censure_compl_imp.Rd plsRcox/man/plsRcox.Rd plsRcox/man/DKplsRcox.Rd plsRcox/man/cv.coxDKsplsDR.Rd plsRcox/man/cv.autoplsRcox.Rd plsRcox/man/internal-plsRcox.Rd plsRcox/man/cv.coxDKplsDR.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.