plsRcox: Partial Least Squares Regression for Cox Models and Related Techniques
Version 1.7.2

Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.

Browse man pages Browse package API and functions Browse package files

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>.
Date of publication2014-12-17 16:18:31
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.7.2
URL http://www-irma.u-strasbg.fr/~fbertran/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("plsRcox")

Man pages

coxDKpls2DR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals
coxDKplsDR: Fitting a Direct Kernel PLS model on the (Deviance) Residuals
coxDKsplsDR: Fitting a Direct Kernel sPLSR model on the (Deviance)...
coxpls: Fitting a Cox-Model on PLSR components
coxpls2: Fitting a Cox-Model on PLSR components
coxpls2DR: Fitting a PLSR model on the (Deviance) Residuals
coxpls3: Fitting a Cox-Model on PLSR components
coxpls3DR: Fitting a PLSR model on the (Deviance) Residuals
coxplsDR: Fitting a PLSR model on the (Deviance) Residuals
coxsplsDR: Fitting a sPLSR model on the (Deviance) Residuals
cv.autoplsRcox: Cross-validating an autoplsRcox-Model
cv.coxDKplsDR: Cross-validating a DKplsDR-Model
cv.coxDKsplsDR: Cross-validating a DKsplsDR-Model
cv.coxpls: Cross-validating a Cox-Model fitted on PLSR components
cv.coxplsDR: Cross-validating a plsDR-Model
cv.coxsplsDR: Cross-validating a splsDR-Model
cv.larsDR: Cross-validating a larsDR-Model
cv.plsRcox: Cross-validating a plsRcox-Model
DKplsRcox: Partial least squares Regression generalized linear models
DR_coxph: (Deviance) Residuals Computation
internal-plsRcox: Internal plsRcox functions
larsDR_coxph: Fitting a LASSO/LARS model on the (Deviance) Residuals
micro.censure: Microsat features and survival times
plsRcox: Partial least squares Regression generalized linear models
predict.plsRcoxmodel: Print method for plsRcox models
print.plsRcoxmodel: Print method for plsRcox models
print.summary.plsRcoxmodel: Print method for summaries of plsRcox models
summary.plsRcoxmodel: Summary method for plsRcox models
Xmicro.censure_compl_imp: Imputed Microsat features

Functions

DKplsRcox Man page Source code
DKplsRcoxmodel.default Man page Source code
DKplsRcoxmodel.formula Man page Source code
DR_coxph Man page Source code
Xmicro.censure_compl_imp Man page
correctp.cox Man page Source code
coxDKpls2DR Man page Source code
coxDKpls2DR.default Man page Source code
coxDKpls2DR.formula Man page Source code
coxDKplsDR Man page Source code
coxDKplsDR.default Man page Source code
coxDKplsDR.formula Man page Source code
coxDKsplsDR Man page Source code
coxDKsplsDR.default Man page Source code
coxDKsplsDR.formula Man page Source code
coxpls Man page Source code
coxpls.default Man page Source code
coxpls.formula Man page Source code
coxpls2 Man page Source code
coxpls2.default Man page Source code
coxpls2.formula Man page Source code
coxpls2DR Man page Source code
coxpls2DR.default Man page Source code
coxpls2DR.formula Man page Source code
coxpls3 Man page Source code
coxpls3.default Man page Source code
coxpls3.formula Man page Source code
coxpls3DR Man page Source code
coxpls3DR.default Man page Source code
coxpls3DR.formula Man page Source code
coxplsDR Man page Source code
coxplsDR.default Man page Source code
coxplsDR.formula Man page Source code
coxsplsDR Man page Source code
coxsplsDR.default Man page Source code
coxsplsDR.formula Man page Source code
cv.autoplsRcox Man page Source code
cv.coxDKplsDR Man page Source code
cv.coxDKsplsDR Man page Source code
cv.coxpls Man page Source code
cv.coxplsDR Man page Source code
cv.coxsplsDR Man page Source code
cv.larsDR Man page Source code
cv.plsRcox Man page Source code
getIndic Man page Source code
getIndicCV Man page Source code
getIndicCViAUCSH Man page Source code
getIndicCViAUCSurvROCTest Man page Source code
getmin2 Source code
larsDR_coxph Man page Source code
larsDR_coxph.default Man page Source code
larsDR_coxph.formula Man page Source code
logplik Source code
micro.censure Man page
pls.cox Man page Source code
plsRcox Man page Source code
plsRcoxmodel.default Man page Source code
plsRcoxmodel.formula Man page Source code
predict.pls.cox Man page Source code
predict.plsRcoxmodel Man page Source code
print.plsRcoxmodel Man page Source code
print.summary.plsRcoxmodel Man page Source code
spls.cox Man page Source code
spls.dv Man page Source code
summary.plsRcoxmodel Man page Source code
ust Man page Source code

Files

inst
inst/CITATION
NAMESPACE
NEWS
data
data/micro.censure.RData
data/Xmicro.censure_compl_imp.RData
R
R/coxplsDR.formula.R
R/coxpls.default.R
R/DR_coxph.R
R/cv.coxsplsDR.R
R/cv.autoplsRcox.R
R/coxpls.R
R/coxDKplsDR.formula.R
R/coxDKpls2DR.default.R
R/cv.plsRcox.R
R/internal-plsRcox.R
R/cv.larsDR.R
R/coxpls2DR.R
R/coxDKpls2DR.R
R/cv.coxDKsplsDR.R
R/cv.coxpls.R
R/coxDKpls2DR.formula.R
R/coxpls3.default.R
R/larsDR_coxph.default.R
R/plsRcoxmodel.default.R
R/coxpls3DR.R
R/print.plsRcoxmodel.R
R/DKplsRcox.R
R/coxpls3DR.formula.R
R/plsRcoxmodel.formula.R
R/coxDKplsDR.default.R
R/summary.plsRcoxmodel.R
R/coxpls3.formula.R
R/coxDKsplsDR.default.R
R/larsDR_coxph.formula.R
R/larsDR_coxph.R
R/print.summary.plsRcoxmodel.R
R/coxsplsDR.formula.R
R/coxpls2.formula.R
R/coxpls3DR.default.R
R/plsRcox.R
R/predict.plsRcoxmodel.R
R/coxplsDR.R
R/coxpls3.R
R/coxDKsplsDR.formula.R
R/coxplsDR.default.R
R/coxpls2.R
R/coxsplsDR.default.R
R/coxpls2DR.formula.R
R/coxDKplsDR.R
R/coxpls2.default.R
R/cv.coxDKplsDR.R
R/coxpls2DR.default.R
R/coxDKsplsDR.R
R/DKplsRcoxmodel.formula.R
R/cv.coxplsDR.R
R/coxsplsDR.R
R/DKplsRcoxmodel.default.R
R/coxpls.formula.R
MD5
DESCRIPTION
man
man/cv.coxsplsDR.Rd
man/coxDKpls2DR.Rd
man/coxpls.Rd
man/cv.coxpls.Rd
man/coxpls2.Rd
man/coxsplsDR.Rd
man/predict.plsRcoxmodel.Rd
man/coxDKplsDR.Rd
man/micro.censure.Rd
man/larsDR_coxph.Rd
man/cv.larsDR.Rd
man/cv.coxplsDR.Rd
man/coxDKsplsDR.Rd
man/coxplsDR.Rd
man/coxpls3.Rd
man/DR_coxph.Rd
man/coxpls2DR.Rd
man/coxpls3DR.Rd
man/print.plsRcoxmodel.Rd
man/print.summary.plsRcoxmodel.Rd
man/cv.plsRcox.Rd
man/summary.plsRcoxmodel.Rd
man/Xmicro.censure_compl_imp.Rd
man/plsRcox.Rd
man/DKplsRcox.Rd
man/cv.coxDKsplsDR.Rd
man/cv.autoplsRcox.Rd
man/internal-plsRcox.Rd
man/cv.coxDKplsDR.Rd
plsRcox documentation built on May 20, 2017, 2:21 a.m.