| Colon | Gene expression data from Alon et al. (1999) |
| Ecoli | Ecoli gene expression and connectivity data from Kao et al.... |
| gsim | GSIM for binary data |
| gsim.cv | Determination of the ridge regularization parameter and the... |
| leukemia | Gene expression data from Golub et al. (1999) |
| logit.spls | Classification procedure for binary response based on a... |
| logit.spls.cv | Cross-validation procedure to calibrate the parameters... |
| logit.spls.stab | Stability selection procedure to estimate probabilities of... |
| matrix.heatmap | Heatmap visualization for matrix |
| mgsim | GSIM for categorical data |
| mgsim.cv | Determination of the ridge regularization parameter and the... |
| mrpls | Ridge Partial Least Square for categorical data |
| mrpls.cv | Determination of the ridge regularization parameter and the... |
| multinom.spls | Classification procedure for multi-label response based on a... |
| multinom.spls.cv | Cross-validation procedure to calibrate the parameters... |
| multinom.spls.stab | Stability selection procedure to estimate probabilities of... |
| plsgenomics-deprecated | Deprecated function(s) in the 'plsgenomics' package |
| plsgenomics-internal | Internal Functions for the 'plsgenomics' package |
| pls.lda | Classification with PLS Dimension Reduction and Linear... |
| pls.lda.cv | Determination of the number of latent components to be used... |
| pls.regression | Multivariate Partial Least Squares Regression |
| pls.regression.cv | Determination of the number of latent components to be used... |
| preprocess | preprocess for microarray data |
| rpls | Ridge Partial Least Square for binary data |
| rpls.cv | Determination of the ridge regularization parameter and the... |
| sample.bin | Generates covariate matrix X with correlated block of... |
| sample.cont | Generates design matrix X with correlated block of covariates... |
| sample.multinom | Generates covariate matrix X with correlated block of... |
| spls | Adaptive Sparse Partial Least Squares (SPLS) regression |
| spls.cv | Cross-validation procedure to calibrate the parameters... |
| spls.stab | Stability selection procedure to estimate probabilities of... |
| SRBCT | Gene expression data from Khan et al. (2001) |
| stability.selection | Stability selection procedure to select covariates for the... |
| stability.selection.heatmap | Heatmap visualization of estimated probabilities of selection... |
| TFA.estimate | Prediction of Transcription Factor Activities using PLS |
| variable.selection | Variable selection using the PLS weights |
