pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Getting started

Package details

AuthorLisa Bramer [aut, cre], Kelly Stratton [aut], Daniel Claborne [aut], Evan Glasscock [ctb], Rachel Richardson [ctb], David Degnan [ctb], Evan Martin [ctb]
MaintainerLisa Bramer <lisa.bramer@pnnl.gov>
LicenseBSD_2_clause + file LICENSE
Version2.4.5
URL https://pmartr.github.io/pmartR/ https://github.com/pmartR/pmartR
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pmartR")

Try the pmartR package in your browser

Any scripts or data that you put into this service are public.

pmartR documentation built on May 29, 2024, 3:38 a.m.