all_subset: Identify All Biomolecules for Use in Normalization

In pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Identify All Biomolecules for Use in Normalization

Description

Selects biomolecules for normalization via choosing all biomolecules currently in the data

Usage

all_subset(e_data, edata_id)

Arguments

e_data	a p \times n + 1 data.frame, where p is the number of peptides, proteins, lipids, or metabolites and n is the number of samples. Each row corresponds to data for a peptide, protein, lipid, or metabolite, with one column giving the biomolecule identifier name.
edata_id	character string indicating the name of the peptide, protein, lipid, or metabolite identifier. Usually obtained by calling attr(omicsData, "cnames")$edata_cname.

Details

This function returns the subset of all biomolecules. These will be used for normalization.

Value

Character vector containing all biomolecules.

Author(s)

Kelly Stratton

pmartR documentation built on Oct. 15, 2024, 1:06 a.m.