Nothing
### This file gives initializations.
initial.em.spmd <- function(PARAM, MU = NULL){
if(exists("X.spmd", envir = .pmclustEnv)){
X.spmd <- get("X.spmd", envir = .pmclustEnv)
}
if(is.null(MU)){
### Set semi-supervised information.
N.spmd <- nrow(X.spmd)
unlabeled.K <- PARAM$K
unlabeled.N.spmd <- N.spmd
# if(SS.clustering){
# unlabeled.K <- unlabeled.K - SS.K
# unlabeled.N.spmd <- unlabeled.N.spmd - length(SS.id.spmd)
# }
### Simple random sampling from data.
N.allspmds <- spmd.allgather.integer(as.integer(unlabeled.N.spmd),
integer(.pmclustEnv$COMM.SIZE))
center.spmd <- rep(0, unlabeled.K)
if(.pmclustEnv$COMM.RANK == 0){
center.spmd <- sample(1:.pmclustEnv$COMM.SIZE, unlabeled.K,
replace = TRUE,
prob = N.allspmds / sum(N.allspmds)) - 1
}
center.spmd <- spmd.bcast.integer(as.integer(center.spmd))
tmp <- NULL
n.center.spmd <- sum(center.spmd == .pmclustEnv$COMM.RANK)
if(n.center.spmd > 0){
N.pool <- 1:N.spmd
# if(SS.clustering && length(SS.id.spmd) > 0){
# N.pool <- N.pool[-SS.id.spmd]
# }
id.center.spmd <- sample(N.pool, n.center.spmd)
tmp <- matrix(X.spmd[id.center.spmd,], ncol = ncol(X.spmd),
byrow = TRUE)
}
MU <- matrix(unlist(spmd.allgather.object(tmp)),
nrow = ncol(X.spmd), ncol = unlabeled.K)
### Combind centers from semi-supervised information if any.
# PARAM$MU <- cbind(SS.MU, MU)
PARAM$MU <- MU
} else{
PARAM$MU <- MU
}
### For iris example.
# PARAM$MU <- c(
# -0.8976739, 1.3968289, 0.5514857,
# 1.0156020, 0.3273175, 0.5567457,
# -1.3357516, 0.5336209, 1.2700404,
# -1.3110521, 0.2632600, 1.7063794
# )
# PARAM$MU <- c(
# 0.2328901, 0.7281706, -1.0026075,
# -0.6238820, -0.2584021, 0.8862744,
# 0.4944164, 0.7662080, -1.2993873,
# 0.4674663, 0.7461591, -1.2516524
# )
# PARAM$MU <- matrix(PARAM$MU, nrow = 4)
e.step.spmd(PARAM)
PARAM <- em.onestep.spmd(PARAM)
PARAM$logL <- logL.step.spmd()
em.update.class.spmd()
PARAM
} # End of initial.em.spmd().
initial.RndEM.spmd <- function(PARAM){
logL.save <- -Inf
i.iter <- 1
PARAM.org <- PARAM
repeat{
PARAM <- try(initial.em.spmd(PARAM.org))
if(comm.any(class(PARAM) == "try-error")){
comm.cat(PARAM, "\n", quiet = TRUE)
next
}
N.CLASS <- get.N.CLASS(PARAM$K)
if(any(N.CLASS < PARAM$min.N.CLASS)){
if(.pmclustEnv$CONTROL$debug > 0){
comm.cat("N.CLASS: ", N.CLASS, "\n", quiet = TRUE)
}
next
}
if(.pmclustEnv$CONTROL$debug > 0){
comm.cat("Initial: ", format(Sys.time(), "%H:%M:%S"),
", iter: ", i.iter, ", logL: ",
sprintf("%-20.10f", PARAM$logL), "\n",
sep = "", quiet = TRUE)
}
if(logL.save < PARAM$logL){
logL.save <- PARAM$logL
PARAM.save <- PARAM
PARAM.save$initial.i.iter <- i.iter
}
i.iter <- i.iter + 1
if(i.iter > .pmclustEnv$CONTROL$RndEM.iter){
break
}
}
if(.pmclustEnv$CONTROL$debug > 0){
comm.cat("Using initial iter: ", PARAM.save$initial.i.iter, "\n",
sep = "", quiet = TRUE)
}
PARAM <- initial.em.spmd(PARAM.save, MU = PARAM.save$MU)
PARAM
} # End of initial.RndEM.spmd().
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