polyfreqs: Bayesian Population Genomics in Autopolyploids

Implements a Gibbs sampling algorithm to perform Bayesian inference on biallelic SNP frequencies, genotypes and heterozygosity (observed and expected) in a population of autopolyploids. See the published paper in Molecular Ecology Resources: Blischak et al. (2016) <doi:10.1111/1755-0998.12493>.

AuthorPaul Blischak [aut, cre]
Date of publication2016-12-16 22:56:52
MaintainerPaul Blischak <blischak.4@osu.edu>
LicenseGPL (>= 2)
Version1.0.2
https://github.com/pblischak/polyfreqs

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Files

polyfreqs
polyfreqs/inst
polyfreqs/inst/CITATION
polyfreqs/inst/doc
polyfreqs/inst/doc/polyfreqs_Intro.Rmd
polyfreqs/inst/doc/polyfreqs_Intro.R
polyfreqs/inst/doc/polyfreqs_Intro.html
polyfreqs/src
polyfreqs/src/ref_read_pmf.cpp
polyfreqs/src/sample_p.cpp
polyfreqs/src/sample_g.cpp
polyfreqs/src/sim_ref_reads.cpp
polyfreqs/src/RcppExports.cpp
polyfreqs/NAMESPACE
polyfreqs/data
polyfreqs/data/ref_reads.rda
polyfreqs/data/total_reads.rda
polyfreqs/R
polyfreqs/R/simple_freqs.R polyfreqs/R/point_Hobs.R polyfreqs/R/data_desc.R polyfreqs/R/print_g.R polyfreqs/R/point_Hexp.R polyfreqs/R/polyfreqs.R polyfreqs/R/sim_reads.R polyfreqs/R/RcppExports.R polyfreqs/R/polyfreqs_pps.R polyfreqs/R/get_map_genotypes.R
polyfreqs/vignettes
polyfreqs/vignettes/polyfreqs_Intro.Rmd
polyfreqs/README.md
polyfreqs/MD5
polyfreqs/build
polyfreqs/build/vignette.rds
polyfreqs/DESCRIPTION
polyfreqs/man
polyfreqs/man/polyfreqs.Rd polyfreqs/man/total_reads.Rd polyfreqs/man/simple_freqs.Rd polyfreqs/man/polyfreqs_pps.Rd polyfreqs/man/point_Hobs.Rd polyfreqs/man/point_Hexp.Rd polyfreqs/man/sim_reads.Rd polyfreqs/man/ref_reads.Rd polyfreqs/man/get_map_genotypes.Rd

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