point_Hobs: Estimation of observed heterozygosity
In polyfreqs: Bayesian Population Genomics in Autopolyploids
Description
Usage
Arguments
Details
Value
References
Description
INTERNAL: Estimates a posterior distribution for the per locus observed heterozygosity using the unbiased estimator of Hardy (2015) and the poterior samples of genotypes calculated by polyfreqs.
Usage
1
point_Hobs(genotypes, ploidy)
Arguments
genotypes
A matrix of estimated genotypes returned from the function get_map_genotypes.
ploidy
The ploidy level of individuals in the population (must be >= 2).
Details
Posterior distributions for the per locus observed heterozygosity are automatically calculated and returned by the polyfreqs function.
Value
Returns per locus estimates of observed heterozygosity (per_locus_Hobs).
References
Hardy, OJ. 2015. Population genetics of autopolyploids under a mixed mating model and the estimation of selfing rate. Molecular Ecology Resources, doi: 10.1111/1755-0998.12431.
polyfreqs documentation built on May 2, 2019, 9:28 a.m.
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Description Usage Arguments Details Value References
Description
INTERNAL: Estimates a posterior distribution for the per locus observed heterozygosity using the unbiased estimator of Hardy (2015) and the poterior samples of genotypes calculated by polyfreqs.
Usage
1 | point_Hobs(genotypes, ploidy)
|
Arguments
genotypes |
A matrix of estimated genotypes returned from the function |
ploidy |
The ploidy level of individuals in the population (must be >= 2). |
Details
Posterior distributions for the per locus observed heterozygosity are automatically calculated and returned by the polyfreqs function.
Value
Returns per locus estimates of observed heterozygosity (per_locus_Hobs).
References
Hardy, OJ. 2015. Population genetics of autopolyploids under a mixed mating model and the estimation of selfing rate. Molecular Ecology Resources, doi: 10.1111/1755-0998.12431.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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