Man pages for polysat
Tools for Polyploid Microsatellite Analysis
| alleleCorrelations | Assign Alleles to Isoloci Based on Distribution of Genotypes |
| alleleDiversity | Retrieve and Count Unique Alleles |
| AllopolyTutorialData | Simulated Allotetraploid Data |
| assignClones | Group Individuals Based on a Distance Threshold |
| Bruvo2.distance | Distance Measure of Bruvo et al. under Genome Loss and... |
| Bruvo.distance | Genetic Distance Metric of Bruvo et al. |
| calcFst | Estimate Population Differentiation Statistics |
| catalanAlleles | Sort Alleles into Isoloci |
| deleteSamples | Remove Samples or Loci from an Object |
| deSilvaFreq | Estimate Allele Frequencies with EM Algorithm |
| editGenotypes | Edit Genotypes Using the Data Editor |
| estimatePloidy | Estimate Ploidies Based on Allele Counts |
| FCRinfo | Additional Data on Rubus Samples |
| find.missing.gen | Find Missing Genotypes |
| freq.to.genpop | Convert Allele Frequencies for Adegenet |
| genambig-class | Class "genambig" |
| genambig.to.genbinary | Convert Between Genotype Object Classes |
| genbinary-class | Class "genbinary" |
| gendata-class | Class "gendata" |
| gendata.to.genind | Convert Data to genind Format |
| genIndex | Find All Unique Genotypes for a Locus |
| genotypeDiversity | Genotype Diversity Statistics |
| genotypeProbs | Calculate Probabilities of Unambiguous Genotypes |
| isMissing | Determine Whether Genotypes Are Missing |
| Lynch.distance | Calculate Band-Sharing Dissimilarity Between Genotypes |
| meandistance.matrix | Mean Pairwise Distance Matrix |
| meandist.from.array | Tools for Working With Pairwise Distance Arrays |
| mergeAlleleAssignments | Merge Allele Assignment Matrices |
| merge-methods | Merge Two Genotype Objects into One |
| PIC | Polymorphic Information Content |
| pld | Accessor, Replacement, and Manipulation Functions for... |
| ploidysuper-class | Class '"ploidysuper"' and Subclasses |
| plotSSAllo | Perform Allele Assignments across Entire Dataset |
| polysat-internal | Internal Functions in polysat |
| read.ATetra | Read File in ATetra Format |
| read.GeneMapper | Read GeneMapper Genotypes Tables |
| read.GenoDive | Import Genotype Data from GenoDive File |
| read.POPDIST | Read Genotype Data in POPDIST Format |
| read.SPAGeDi | Read Genotypes in SPAGeDi Format |
| read.STRand | Read Genotypes Produced by STRand Software |
| read.Structure | Read Genotypes and Other Data from a Structure File |
| read.Tetrasat | Read Data from a TETRASAT Input File |
| recodeAllopoly | Create a New 'genambig' Dataset with Loci Split into Isoloci |
| reformatPloidies | Convert Ploidy Format of a Dataset |
| Samples | Accessor and Replacement Functions for "gendata" Objects |
| simAllopoly | Generate Simulated Datasets |
| simgen | Randomly Generated Data for Learning polysat |
| simpleFreq | Simple Allele Frequency Estimator |
| testgenotypes | Rubus Genotype Data for Learning polysat |
| viewGenotypes | Print Genotypes to the Console |
| write.ATetra | Write Genotypes in ATetra Format |
| write.freq.SPAGeDi | Create a File of Allele Frequencies for SPAGeDi |
| write.GeneMapper | Write Genotypes to a Table Similarly to ABI GeneMapper |
| write.GenoDive | Write a File in GenoDive Format |
| write.POPDIST | Write Genotypes to a POPDIST File |
| write.SPAGeDi | Write Genotypes in SPAGeDi Format |
| write.Structure | Write Genotypes in Structure 2.3 Format |
| write.Tetrasat | Write Genotype Data in Tetrasat Format |
