API for polysat
Tools for Polyploid Microsatellite Analysis

Global functions
.G Man page
.genlist Man page
.indexg Man page
.ranmul Man page
.selfmat Man page
.unal1loc Man page
Absent Man page
Absent,genbinary-method Man page
Absent<- Man page
Absent<-,genbinary-method Man page
AllopolyTutorialData Man page
Bruvo.distance Man page Source code
Bruvo2.distance Man page Source code
Description Man page
Description,gendata-method Man page
Description<- Man page
Description<-,gendata-method Man page
FCRinfo Man page
G Source code
Genotype Man page
Genotype,genambig-method Man page
Genotype,genbinary-method Man page
Genotype<- Man page
Genotype<-,genambig-method Man page
Genotypes Man page
Genotypes,genambig-method Man page
Genotypes,genbinary-method Man page
Genotypes<- Man page
Genotypes<-,genambig-method Man page
Genotypes<-,genbinary-method Man page
Loci Man page
Loci,gendata,missing,missing-method Man page
Loci,gendata,missing,numeric-method Man page
Loci,gendata,numeric,missing-method Man page
Loci,gendata,numeric,numeric-method Man page
Loci<- Man page
Loci<-,genambig-method Man page
Loci<-,genbinary-method Man page
Loci<-,gendata-method Man page
Lynch.distance Man page Source code
Missing Man page
Missing,gendata-method Man page
Missing<- Man page
Missing<-,genambig-method Man page
Missing<-,genbinary-method Man page
Missing<-,gendata-method Man page
PIC Man page Source code
Ploidies Man page
Ploidies,gendata-method Man page
Ploidies<- Man page
Ploidies<-,gendata-method Man page
PopInfo Man page
PopInfo,gendata-method Man page
PopInfo<- Man page
PopInfo<-,gendata-method Man page
PopNames Man page
PopNames,gendata-method Man page
PopNames<- Man page
PopNames<-,gendata-method Man page
PopNum Man page
PopNum,gendata,character-method Man page
PopNum<- Man page
PopNum<-,gendata,character-method Man page
Present Man page
Present,genbinary-method Man page
Present<- Man page
Present<-,genbinary-method Man page
Samples Man page
Samples,gendata,character,missing-method Man page
Samples,gendata,character,numeric-method Man page
Samples,gendata,missing,missing-method Man page
Samples,gendata,missing,numeric-method Man page
Samples,gendata,numeric,missing-method Man page
Samples,gendata,numeric,numeric-method Man page
Samples<- Man page
Samples<-,genambig-method Man page
Samples<-,genbinary-method Man page
Samples<-,gendata-method Man page
Shannon Man page Source code
Simpson Man page Source code
Simpson.var Man page Source code
Usatnts Man page
Usatnts,gendata-method Man page
Usatnts<- Man page
Usatnts<-,gendata-method Man page
[,genambig-method Man page
[,genbinary-method Man page
[,gendata-method Man page
alleleCorrelations Man page Source code
alleleDiversity Man page Source code
assignClones Man page Source code
calcFst Man page Source code
calcPopDiff Man page Source code
catalanAlleles Man page Source code
deSilvaFreq Man page Source code
deleteLoci Man page
deleteLoci,genambig-method Man page
deleteLoci,genbinary-method Man page
deleteLoci,gendata-method Man page
deleteSamples Man page
deleteSamples,genambig-method Man page
deleteSamples,genbinary-method Man page
deleteSamples,gendata-method Man page
editGenotypes Man page
editGenotypes,genambig-method Man page
editGenotypes,genbinary-method Man page
estimatePloidy Man page
estimatePloidy,genambig-method Man page
estimatePloidy,genbinary-method Man page
find.missing.gen Man page Source code
find.na.dist Man page Source code
find.na.dist.not.missing Man page Source code
fixloci Man page Source code
freq.to.genpop Man page Source code
genIndex Man page
genIndex,array-method Man page
genIndex,genambig-method Man page
genambig-class Man page
genambig.to.genbinary Man page Source code
genbinary-class Man page
genbinary.to.genambig Man page Source code
gendata-class Man page
gendata.to.genind Man page Source code
genlist Source code
genotypeDiversity Man page Source code
genotypeProbs Man page Source code
initialize,genambig-method Man page
initialize,genbinary-method Man page
initialize,gendata-method Man page
isMissing Man page
isMissing,genambig-method Man page
isMissing,genbinary-method Man page
meandist.from.array Man page Source code
meandistance.matrix Man page Source code
meandistance.matrix2 Man page Source code
merge Man page
merge,genambig,genambig-method Man page
merge,genbinary,genbinary-method Man page
merge,gendata,gendata-method Man page
merge-methods Man page
mergeAlleleAssignments Man page Source code
ndexg Source code
plCollapse Man page
plCollapse,ploidylocus,logical,logical-method Man page
plCollapse,ploidymatrix,logical,logical-method Man page
plCollapse,ploidyone,logical,logical-method Man page
plCollapse,ploidysample,logical,logical-method Man page
pld Man page
pld,ploidylocus-method Man page
pld,ploidymatrix-method Man page
pld,ploidyone-method Man page
pld,ploidysample-method Man page
pld<- Man page
pld<-,ploidylocus-method Man page
pld<-,ploidymatrix-method Man page
pld<-,ploidyone-method Man page
pld<-,ploidysample-method Man page
ploidylocus-class Man page
ploidymatrix-class Man page
ploidyone-class Man page
ploidysample-class Man page
ploidysuper-class Man page
plotParamHeatmap Man page Source code
plotSSAllo Man page Source code
processDatasetAllo Man page Source code
ranmul Source code
read.ATetra Man page Source code
read.GeneMapper Man page Source code
read.GenoDive Man page Source code
read.POPDIST Man page Source code
read.SPAGeDi Man page Source code
read.STRand Man page Source code
read.Structure Man page Source code
read.Tetrasat Man page Source code
recodeAllopoly Man page Source code
reformatPloidies Man page Source code
selfmat Source code
simAllopoly Man page Source code
simgen Man page
simpleFreq Man page Source code
summary,genambig-method Man page
summary,genbinary-method Man page
summary,gendata-method Man page
testAlGroups Man page Source code
testgenotypes Man page
unal1loc Source code
viewGenotypes Man page
viewGenotypes,genambig-method Man page
viewGenotypes,genbinary-method Man page
write.ATetra Man page Source code
write.GeneMapper Man page Source code
write.GenoDive Man page Source code
write.POPDIST Man page Source code
write.SPAGeDi Man page Source code
write.Structure Man page Source code
write.Tetrasat Man page Source code
write.freq.SPAGeDi Man page Source code
polysat documentation built on Aug. 18, 2017, 1:02 a.m.