permanova.lmer: Permutation ANOVA for 'lmer' Model

In predictmeans: Predicted Means for Linear and Semiparametric Models

Permutation ANOVA for lmer Model

Description

This function provides permutation ANOVA for lmer model.

Usage

permanova.lmer(model, nperm = 999, ncore=3, type = c("I", "II", "III",  "1", "2", "3"),
 ...) 

Arguments

model	Model object returned by lmer.
nperm	Number of permutation, the default value is 999.
ncore	Number of core for parallel computing, the default value is 3.
type	The type of ANOVA table requested (using SAS terminology) with Type I being the familiar sequential ANOVA table.
...	Use to setup option: seed – Specify a random number generator seed, for reproducible results.

Value

Permutation ANOVA table.

Author(s)

Dongwen Luo, Siva Ganesh and John Koolaard

Examples

# library(predictmeans)
# Oats$nitro <- factor(Oats$nitro) 
# fm <- lmer(yield ~ nitro*Variety+(1|Block/Variety), data=Oats)

## Permutation Test for model terms
# permanova.lmer(fm)
# permanova.lmer(fm, type=2)
## Compare to F test
# fm0 <- lme(yield ~ nitro*Variety, random=~1|Block/Variety, data=Oats)
# anova(fm0)

predictmeans documentation built on May 29, 2024, 9:49 a.m.