Man pages for presto
Fast Functions for Differential Expression Using Wilcoxon and AUC
| collapse_counts | Collapse a single-cell count matrix into pseudobulks |
| compute_hash | Compute a unique integer hash for each row of a data.frame |
| nnzeroGroups | Group-wise non-zero counts of a matrix along one axis |
| pipe | Pipe operator |
| presto-package | presto: Fast differential expression |
| pseudobulk_deseq2 | Pseudobulk differential expression with DESeq2 |
| pseudobulk_one_vs_all | Pseudobulk DESeq2: one-vs-all contrasts |
| pseudobulk_pairwise | Pseudobulk DESeq2: pairwise contrasts |
| pseudobulk_within | Pseudobulk DESeq2: within-group contrasts |
| rank_matrix | Column-wise tied ranks of a matrix |
| sumGroups | Group-wise sum of a matrix along one axis |
| summarize_dge_pairs | Summarize directional pairwise DGE results |
| top_markers | Top markers per group from wilcoxauc results |
| top_markers_dds | Top markers per group from pseudobulk DESeq2 results |
| toy_sce | Toy SingleCellExperiment object for examples and tests |
| toy_seurat | Toy Seurat object for examples and tests |
| wilcoxauc | Fast Wilcoxon rank-sum test and auROC across groups |
