plot_3D: Plot output of prioritize_3D

In prior3D: 3D Prioritization Algorithm

Plot output of prioritize_3D

Description

Plot summarized output of prioritize_3D

Usage

plot_3D(x, to_plot = "all", add_lines = TRUE)

Arguments

x	Output of prioritize_3D.
to_plot	Any of "maps", "relative_held" or "all". The default is "all". See more in Details.
add_lines	If TRUE, then border lines from maps::map are ploted as well.

Details

This function plots the summarized output of prioritize_3D for all the selected budgets. The produced plot can contain information about:

• "maps": produced maps normalized at a [0,1] scale.

• "relative_held": percentage of protection for all features per depth level.

• "all": both "maps" and "relative_held".

Value

A plot.

References

Becker, R.A., Wilks, A.R., Brownrigg, R., & Minka, T.P. (2023). maps: Draw Geographical Maps. R package version 3.4.2, https://CRAN.R-project.org/package=maps

See Also

prioritize_3D

Examples

## Not run: 
## This example requires commercial solver from 'gurobi' package for
## portfolio = "gap". Else replace it with e.g. portfolio = "shuffle" for using
## a free solver like the one from 'highs' package.

biodiv_raster <- get_biodiv_raster()
depth_raster <- get_depth_raster()
data(biodiv_df)

# You can split features' 2D distributions into 3D ones and then run only 3D analysis
split_features <- split_rast(biodiv_raster,
                             depth_raster,
                             breaks = c(0, -40, -200, -2000, -Inf),
                             biodiv_df,
                             val_depth_range=TRUE)

out_3D <- prioritize_3D(split_features = split_features,
                        depth_raster = depth_raster,
                        breaks = c(0, -40, -200, -2000, -Inf),
                        biodiv_df = biodiv_df,
                        priority_weights = NULL,#priority_weights,
                        budget_percents = seq(0, 1, 0.1),
                        budget_weights = "equal",
                        penalty = 0,
                        edge_factor = 0.5,
                        gap = 0.1,
                        threads = parallel::detectCores(),
                        sep_priority_weights = ",",
                        portfolio = "gap",
                        portfolio_opts = list(number_solutions = 10),
                        sep_biodiv_df = ",",
                        locked_in_raster = NULL,
                        locked_out_raster = NULL)

plot_3D(out_3D, to_plot="all", add_lines=FALSE)
plot_3D(out_3D, to_plot="all", add_lines=TRUE)
plot_3D(out_3D, to_plot="maps", add_lines=TRUE)
plot_3D(out_3D, to_plot="relative_held", add_lines=TRUE)

## End(Not run)

prior3D documentation built on April 11, 2025, 5:39 p.m.