prodlim: Product-Limit Estimation for Censored Event History Analysis

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

Author
Thomas A. Gerds
Date of publication
2015-12-19 16:15:24
Maintainer
Thomas A. Gerds <tag@biostat.ku.dk>
License
GPL (>= 2)
Version
1.5.7

View on CRAN

Man pages

atRisk
Drawing numbers of subjects at-risk of experiencing an event...
backGround
Background and grid color control.
clusterTestData
Data set with a clustered data structure, for testing the...
confInt
Add point-wise confidence limits to the graphs of...
crModel
Competing risks model for simulation
dimColor
Dim a given color to a specified density
EventHistory.frame
Event history frame
getEvent
Extract a column from an event history object.
getStates
States of a multi-state model
Hist
Create an event history response variable
jackknife
Compute jackknife pseudo values.
leaveOneOut
Compute jackknife pseudo values.
List2Matrix
Reduce list to a matrix or data.frame with names as new...
markTime
Marking product-limit plots at the censored times.
meanNeighbors
Helper function to obtain running means for prodlim objects.
model.design
Extract a design matrix and specials from a model.frame
neighborhood
Nearest neighborhoods for kernel smoothing
parseSpecialNames
Parse special terms
PercentAxis
Percentage-labeled axis.
plotCompetingRiskModel
Plotting a competing-risk-model.
plot.Hist
Box-arrow diagrams for multi-state models.
plotIllnessDeathModel
Plotting an illness-death-model.
plot.prodlim
Plotting event probabilities over time
predict.prodlim
Predicting event probabilities from product limit estimates
predictSurvIndividual
Predict individual survival probabilities
print.prodlim
Print objects in the prodlim library
prodlim
Functions for estimating probabilities from right censored...
quantile.prodlim
Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
redist
Calculation of Efron's re-distribution to the right algorithm...
row.match
Identifying rows in a matrix or data.frame
SimCompRisk
Simulate competing risks data
SimSurv
Simulate survival data
sindex
Index for evaluation of step functions.
SmartControl
Function to facilitate the control of arguments passed to...
stopTime
Stop the time of an event history object
strip.terms
Strip special functions from terms
summary.Hist
Summary of event histories
summary.prodlim
Summary method for prodlim objects.
survModel
Survival model for simulation

Files in this package

prodlim
prodlim/tests
prodlim/tests/testthat
prodlim/tests/testthat/prodlim.R
prodlim/tests/testthat/pseudo.R
prodlim/tests/testthat/cluster.R
prodlim/src
prodlim/src/predict.c
prodlim/src/loo.c
prodlim/src/sindex.c
prodlim/src/GMLE.c
prodlim/src/icens_prodlim.c
prodlim/src/prodlim_surv.c
prodlim/src/predict_individual_survival.c
prodlim/src/prodlim_multistates.c
prodlim/src/icens_prodlim_ml.c
prodlim/src/iindex.c
prodlim/src/summary_prodlim.c
prodlim/src/life_table.c
prodlim/src/prodlim_clustersurv.c
prodlim/src/prodlim.c
prodlim/src/IntIndex.c
prodlim/src/prodlim_comprisk.c
prodlim/src/neighborhood.c
prodlim/src/prodlim.h
prodlim/NAMESPACE
prodlim/R
prodlim/R/model.specials.R
prodlim/R/lines.prodlim.R
prodlim/R/lifeTab.competing.risks.R
prodlim/R/Hist.R
prodlim/R/PetoInt.R
prodlim/R/findArrow.R
prodlim/R/plot.Hist.R
prodlim/R/leaveOneOut.R
prodlim/R/getStates.R
prodlim/R/print.prodlim.R
prodlim/R/print.summary.prodlim.R
prodlim/R/listNbh.R
prodlim/R/lifeTab.survival.R
prodlim/R/print.IntIndex.R
prodlim/R/markTime.R
prodlim/R/lifeTab.R
prodlim/R/print.quantile.prodlim.R
prodlim/R/row.match.R
prodlim/R/confInt.R
prodlim/R/prodlim.R
prodlim/R/resolveLinPred.R
prodlim/R/backGround.R
prodlim/R/dimColor.R
prodlim/R/print.Hist.R
prodlim/R/EventHistory.frame.R
prodlim/R/survModel.R
prodlim/R/atRisk.R
prodlim/R/mean.prodlim.R
prodlim/R/predictSurvIndividual.R
prodlim/R/crModel.R
prodlim/R/iindex.R
prodlim/R/eventsMethods.R
prodlim/R/IntIndex.R
prodlim/R/plotIntervals.R
prodlim/R/List2Matrix.R
prodlim/R/prodlimIcensSurv.R
prodlim/R/parseSpecialNames.R
prodlim/R/quantile.prodlim.R
prodlim/R/followup.R
prodlim/R/strip.terms.R
prodlim/R/summary.prodlim.R
prodlim/R/PercentAxis.R
prodlim/R/sindex.R
prodlim/R/neighbors.R
prodlim/R/redist.R
prodlim/R/SmartControl.R
prodlim/R/extract.name.from.special.R
prodlim/R/prodlimMulti.R
prodlim/R/meanNeighbors.R
prodlim/R/print.neighborhood.R
prodlim/R/neighborhood.R
prodlim/R/plotIllnessDeathModel.R
prodlim/R/plot.prodlim.R
prodlim/R/stopTime.R
prodlim/R/prodlim-package.R
prodlim/R/model.design.R
prodlim/R/SimSurv.R
prodlim/R/checkCauses.R
prodlim/R/plotCompetingRiskModel.R
prodlim/R/SimCompRisk.R
prodlim/R/resolveX.R
prodlim/R/summary.Hist.R
prodlim/R/predict.prodlim.R
prodlim/R/getEvent.R
prodlim/R/jackknife.R
prodlim/MD5
prodlim/DESCRIPTION
prodlim/man
prodlim/man/List2Matrix.Rd
prodlim/man/row.match.Rd
prodlim/man/crModel.Rd
prodlim/man/dimColor.Rd
prodlim/man/prodlim.Rd
prodlim/man/SmartControl.Rd
prodlim/man/markTime.Rd
prodlim/man/plotIllnessDeathModel.Rd
prodlim/man/PercentAxis.Rd
prodlim/man/atRisk.Rd
prodlim/man/backGround.Rd
prodlim/man/confInt.Rd
prodlim/man/clusterTestData.Rd
prodlim/man/plot.prodlim.Rd
prodlim/man/quantile.prodlim.Rd
prodlim/man/plot.Hist.Rd
prodlim/man/stopTime.Rd
prodlim/man/leaveOneOut.Rd
prodlim/man/redist.Rd
prodlim/man/survModel.Rd
prodlim/man/predict.prodlim.Rd
prodlim/man/print.prodlim.Rd
prodlim/man/plotCompetingRiskModel.Rd
prodlim/man/SimSurv.Rd
prodlim/man/SimCompRisk.Rd
prodlim/man/predictSurvIndividual.Rd
prodlim/man/EventHistory.frame.Rd
prodlim/man/jackknife.Rd
prodlim/man/model.design.Rd
prodlim/man/Hist.Rd
prodlim/man/neighborhood.Rd
prodlim/man/sindex.Rd
prodlim/man/summary.Hist.Rd
prodlim/man/getStates.Rd
prodlim/man/summary.prodlim.Rd
prodlim/man/getEvent.Rd
prodlim/man/meanNeighbors.Rd
prodlim/man/strip.terms.Rd
prodlim/man/parseSpecialNames.Rd