prodlim: Product-Limit Estimation for Censored Event History Analysis

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

AuthorThomas A. Gerds
Date of publication2017-01-14 13:41:04
MaintainerThomas A. Gerds <tag@biostat.ku.dk>
LicenseGPL (>= 2)
Version1.5.9

View on CRAN

Man pages

atRisk: Drawing numbers of subjects at-risk of experiencing an event...

backGround: Background and grid color control.

confInt: Add point-wise confidence limits to the graphs of...

crModel: Competing risks model for simulation

dimColor: Dim a given color to a specified density

EventHistory.frame: Event history frame

getEvent: Extract a column from an event history object.

getStates: States of a multi-state model

Hist: Create an event history response variable

jackknife: Compute jackknife pseudo values.

leaveOneOut: Compute jackknife pseudo values.

List2Matrix: Reduce list to a matrix or data.frame with names as new...

markTime: Marking product-limit plots at the censored times.

meanNeighbors: Helper function to obtain running means for prodlim objects.

model.design: Extract a design matrix and specials from a model.frame

neighborhood: Nearest neighborhoods for kernel smoothing

parseSpecialNames: Parse special terms

PercentAxis: Percentage-labeled axis.

plotCompetingRiskModel: Plotting a competing-risk-model.

plot.Hist: Box-arrow diagrams for multi-state models.

plotIllnessDeathModel: Plotting an illness-death-model.

plot.prodlim: Plotting event probabilities over time

predict.prodlim: Predicting event probabilities from product limit estimates

predictSurvIndividual: Predict individual survival probabilities

print.prodlim: Print objects in the prodlim library

prodlim: Functions for estimating probabilities from right censored...

quantile.prodlim: Quantiles for Kaplan-Meier and Aalen-Johansen estimates.

redist: Calculation of Efron's re-distribution to the right algorithm...

row.match: Identifying rows in a matrix or data.frame

SimCompRisk: Simulate competing risks data

SimSurv: Simulate survival data

sindex: Index for evaluation of step functions.

SmartControl: Function to facilitate the control of arguments passed to...

stopTime: Stop the time of an event history object

strip.terms: Strip special functions from terms

summary.Hist: Summary of event histories

summary.prodlim: Summary method for prodlim objects.

survModel: Survival model for simulation

Files in this package

prodlim
prodlim/tests
prodlim/tests/testthat
prodlim/tests/testthat/prodlim.R
prodlim/tests/testthat/pseudo.R
prodlim/tests/testthat/cluster.R
prodlim/src
prodlim/src/predict.c
prodlim/src/loo.c
prodlim/src/sindex.c
prodlim/src/GMLE.c
prodlim/src/icens_prodlim.c
prodlim/src/prodlim_surv.c
prodlim/src/predict_individual_survival.c
prodlim/src/prodlim_multistates.c
prodlim/src/icens_prodlim_ml.c
prodlim/src/iindex.c
prodlim/src/summary_prodlim.c
prodlim/src/life_table.c
prodlim/src/prodlim_clustersurv.c
prodlim/src/prodlim.c
prodlim/src/IntIndex.c
prodlim/src/prodlim_comprisk.c
prodlim/src/neighborhood.c
prodlim/src/prodlim.h
prodlim/NAMESPACE
prodlim/R
prodlim/R/model.specials.R prodlim/R/lines.prodlim.R prodlim/R/lifeTab.competing.risks.R prodlim/R/Hist.R prodlim/R/PetoInt.R prodlim/R/findArrow.R prodlim/R/plot.Hist.R prodlim/R/leaveOneOut.R prodlim/R/getStates.R prodlim/R/print.prodlim.R prodlim/R/print.summary.prodlim.R prodlim/R/listNbh.R prodlim/R/lifeTab.survival.R prodlim/R/print.IntIndex.R prodlim/R/markTime.R prodlim/R/lifeTab.R prodlim/R/print.quantile.prodlim.R prodlim/R/row.match.R prodlim/R/confInt.R prodlim/R/prodlim.R prodlim/R/resolveLinPred.R prodlim/R/backGround.R prodlim/R/dimColor.R prodlim/R/print.Hist.R prodlim/R/EventHistory.frame.R prodlim/R/survModel.R prodlim/R/atRisk.R prodlim/R/mean.prodlim.R prodlim/R/predictSurvIndividual.R prodlim/R/crModel.R prodlim/R/iindex.R prodlim/R/eventsMethods.R prodlim/R/IntIndex.R prodlim/R/plotIntervals.R prodlim/R/List2Matrix.R prodlim/R/prodlimIcensSurv.R prodlim/R/parseSpecialNames.R prodlim/R/quantile.prodlim.R prodlim/R/followup.R prodlim/R/strip.terms.R prodlim/R/summary.prodlim.R prodlim/R/PercentAxis.R prodlim/R/sindex.R prodlim/R/neighbors.R prodlim/R/redist.R prodlim/R/SmartControl.R prodlim/R/extract.name.from.special.R prodlim/R/prodlimMulti.R prodlim/R/meanNeighbors.R prodlim/R/print.neighborhood.R prodlim/R/neighborhood.R prodlim/R/plotIllnessDeathModel.R prodlim/R/plot.prodlim.R prodlim/R/stopTime.R prodlim/R/prodlim-package.R prodlim/R/model.design.R prodlim/R/SimSurv.R prodlim/R/checkCauses.R prodlim/R/plotCompetingRiskModel.R prodlim/R/SimCompRisk.R prodlim/R/resolveX.R prodlim/R/summary.Hist.R prodlim/R/predict.prodlim.R prodlim/R/getEvent.R prodlim/R/jackknife.R
prodlim/MD5
prodlim/DESCRIPTION
prodlim/man
prodlim/man/List2Matrix.Rd prodlim/man/row.match.Rd prodlim/man/crModel.Rd prodlim/man/dimColor.Rd prodlim/man/prodlim.Rd prodlim/man/SmartControl.Rd prodlim/man/markTime.Rd prodlim/man/plotIllnessDeathModel.Rd prodlim/man/PercentAxis.Rd prodlim/man/atRisk.Rd prodlim/man/backGround.Rd prodlim/man/confInt.Rd prodlim/man/plot.prodlim.Rd prodlim/man/quantile.prodlim.Rd prodlim/man/plot.Hist.Rd prodlim/man/stopTime.Rd prodlim/man/leaveOneOut.Rd prodlim/man/redist.Rd prodlim/man/survModel.Rd prodlim/man/predict.prodlim.Rd prodlim/man/print.prodlim.Rd prodlim/man/plotCompetingRiskModel.Rd prodlim/man/SimSurv.Rd prodlim/man/SimCompRisk.Rd prodlim/man/predictSurvIndividual.Rd prodlim/man/EventHistory.frame.Rd prodlim/man/jackknife.Rd prodlim/man/model.design.Rd prodlim/man/Hist.Rd prodlim/man/neighborhood.Rd prodlim/man/sindex.Rd prodlim/man/summary.Hist.Rd prodlim/man/getStates.Rd prodlim/man/summary.prodlim.Rd prodlim/man/getEvent.Rd prodlim/man/meanNeighbors.Rd prodlim/man/strip.terms.Rd prodlim/man/parseSpecialNames.Rd

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