progenyClust: Finding the Optimal Cluster Number Using Progeny Clustering
Version 1.2

Implementing the Progeny Clustering algorithm, the 'progenyClust' package assesses the clustering stability and identifies the optimal clustering number for a given data matrix. It uses k-means clustering as a default, provides a tailored hierarchical clustering function, and can be customized to work with other clustering algorithms and different parameter settings. The package includes a main function progenyClust(), plot and summary methods for 'progenyClust' object, a function hclust.progenyClust() for hierarchical clustering, and two example datasets (test and cell) for testing.

AuthorC.W. Hu
Date of publication2016-04-12 20:04:15
MaintainerC.W. Hu <wendyhu001@gmail.com>
LicenseAGPL-3
Version1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("progenyClust")

Getting started

Package overview

Popular man pages

cell: cell imaging metrics dataset
hclust.progenyClust: Hierarchical Clustering
plot.progenyClust: Plot Progeny Clustering Results
progenyClust: Progeny Clustering
progenyClust-package: Finding the Optimal Cluster Number Using Progeny Clustering
test: 3-cluster 2-dimensional test dataset
See all...

All man pages Function index File listing

Man pages

cell: cell imaging metrics dataset
hclust.progenyClust: Hierarchical Clustering
plot.progenyClust: Plot Progeny Clustering Results
progenyClust: Progeny Clustering
progenyClust-package: Finding the Optimal Cluster Number Using Progeny Clustering
test: 3-cluster 2-dimensional test dataset

Functions

cell Man page
hclust.progenyClust Man page Source code
plot.progenyClust Man page Source code
print.summary.progenyClust Man page Source code
progenyClust Man page Source code
progenyClust-package Man page
summary.progenyClust Man page Source code
test Man page

Files

NAMESPACE
data
data/test.rda
data/cell.rda
R
R/progenyClust-internal.R
R/print.summary.progenyClust.R
R/summary.progenyClust.R
R/hclust.progenyClust.R
R/plot.progenyClust.R
R/progenyClust.R
MD5
DESCRIPTION
man
man/progenyClust.Rd
man/plot.progenyClust.Rd
man/test.Rd
man/progenyClust-package.Rd
man/cell.Rd
man/hclust.progenyClust.Rd
progenyClust documentation built on May 19, 2017, 6:30 p.m.

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