pulsar: Parallel Utilities for Lambda Selection along a Regularization Path

Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS).

Author
Zachary Kurtz [aut, cre], Christian Müller [aut, ctb]
Date of publication
2016-08-04 12:43:42
Maintainer
Zachary Kurtz <zdkurtz@gmail.com>
License
GPL (>= 2)
Version
0.2.5
URLs

View on CRAN

Man pages

batch.pulsar
pulsar: batch mode
estrada.class
Estrada class
gcvec
Graphlet correlation vector
getEnvir
Get calling environment
getLamPath
Lambda path
getMaxCov
Max value of cov
get.opt.index
Get or evaluate an optimal index
getTempDir
Generate a string for a temporary directory
graph.diss
Graph dissimilarity
natural.connectivity
Natural Connectivity
opt.index
Optimal index
plot.pulsar
Plot a 'pulsar' S3 object
print.pulsar
Print a 'pulsar' and 'batch.pulsar' S3 object
print.pulsar.refit
Print a 'pulsar.refit' S3 object
pulsar
pulsar: serial or parallel mode
pulsar-function
Graphical model functions for pulsar
pulsar-package
The pulsar package
refit
Refit pulsar model
update.pulsar
Update a pulsar call

Files in this package

pulsar
pulsar/inst
pulsar/inst/CITATION
pulsar/inst/CONTENT.Rmd
pulsar/inst/gstars.bib
pulsar/inst/extdata
pulsar/inst/extdata/simpletorque.tml
pulsar/inst/extdata/BatchJobsMC.R
pulsar/inst/extdata/BatchJobsSerialTest.R
pulsar/inst/extdata/BatchJobsTorque.R
pulsar/inst/doc
pulsar/inst/doc/pulsar.R
pulsar/inst/doc/pulsar.html
pulsar/inst/doc/other-criteria.Rmd
pulsar/inst/doc/other-criteria.html
pulsar/inst/doc/pulsar.Rmd
pulsar/inst/doc/other-criteria.R
pulsar/tests
pulsar/tests/testthat.R
pulsar/tests/testthat
pulsar/tests/testthat/test_graphFeatures.R
pulsar/tests/testthat/test_pulsarbatch.R
pulsar/tests/testthat/test_pulsar.R
pulsar/tests/testthat/test_pulsarserial.R
pulsar/tests/testthat/test_serialVSbatch.R
pulsar/tests/testthat/pulsarfuns.R
pulsar/tests/testthat/test_refitfun.R
pulsar/NAMESPACE
pulsar/R
pulsar/R/binLamSearch.R
pulsar/R/batchPulsarSelect.R
pulsar/R/pulsar-package.R
pulsar/R/graphFeatures.R
pulsar/R/generics.R
pulsar/R/utilities.R
pulsar/R/mcPulsarSelect.R
pulsar/R/refit.R
pulsar/vignettes
pulsar/vignettes/other-criteria.Rmd
pulsar/vignettes/pulsar.Rmd
pulsar/README.md
pulsar/MD5
pulsar/build
pulsar/build/vignette.rds
pulsar/DESCRIPTION
pulsar/man
pulsar/man/estrada.class.Rd
pulsar/man/batch.pulsar.Rd
pulsar/man/gcvec.Rd
pulsar/man/pulsar.Rd
pulsar/man/update.pulsar.Rd
pulsar/man/graph.diss.Rd
pulsar/man/pulsar-package.Rd
pulsar/man/getEnvir.Rd
pulsar/man/getTempDir.Rd
pulsar/man/opt.index.Rd
pulsar/man/refit.Rd
pulsar/man/print.pulsar.refit.Rd
pulsar/man/getLamPath.Rd
pulsar/man/get.opt.index.Rd
pulsar/man/plot.pulsar.Rd
pulsar/man/natural.connectivity.Rd
pulsar/man/pulsar-function.Rd
pulsar/man/getMaxCov.Rd
pulsar/man/print.pulsar.Rd