gcvec: Graphlet correlation vector

In pulsar: Parallel Utilities for Lambda Selection along a Regularization Path

Graphlet correlation vector

Description

Compute graphlet correlations over the desired orbits (default is 11 non-redundant orbits of graphlets of size <=4) for a single graph G

Usage

gcvec(G, orbind = c(0, 2, 5, 7, 8, 10, 11, 6, 9, 4, 1) + 1)

Arguments

G	a p*p adjacency matrix (dense or sparse) of a graph.
orbind	index vector for which orbits to use for computing pairwise graphlet correlations. Default is from Yaveroğlu et al, 2014 (see References), but 1 offset needed for R-style indexing.

References

Hočevar, T., & Demšar, J. (2014). A combinatorial approach to graphlet counting. Bioinformatics (Oxford, England), 30(4), 559–65. doi:10.1093/bioinformatics/btt717

Yaveroğlu, Ö. N., Malod-Dognin, N., Davis, D., Levnajic, Z., Janjic, V., Karapandza, R., … Pržulj, N. (2014). Revealing the hidden language of complex networks. Scientific Reports, 4, 4547. doi:10.1038/srep04547

pulsar documentation built on Sept. 25, 2023, 1:08 a.m.