pvclass: P-Values for Classification

Computes nonparametric p-values for the potential class memberships of new observations as well as cross-validated p-values for the training data. The p-values are based on permutation tests applied to an estimated Bayesian likelihood ratio, using a plug-in statistic for the Gaussian model, 'k nearest neighbors', 'weighted nearest neighbors' or 'penalized logistic regression'. Additionally, it provides graphical displays and quantitative analyses of the p-values.

Author
Niki Zumbrunnen <niki.zumbrunnen@gmail.com>, Lutz Duembgen <lutz.duembgen@stat.unibe.ch>.
Date of publication
2015-11-03 10:59:08
Maintainer
Niki Zumbrunnen <niki.zumbrunnen@gmail.com>
License
GPL (>= 2)
Version
1.3

View on CRAN

Man pages

analyze.pvs
Analyze P-Values
buerk
Medical Dataset
cvpvs
Cross-Validated P-Values
cvpvs.gaussian
Cross-Validated P-Values (Gaussian)
cvpvs.knn
Cross-Validated P-Values (k Nearest Neighbors)
cvpvs.logreg
Cross-Validated P-Values (Penalized Multicategory Logistic...
cvpvs.wnn
Cross-Validated P-Values (Weighted Nearest Neighbors)
pvclass-package
P-Values for Classification
pvs
P-Values to Classify New Observations
pvs.gaussian
P-Values to Classify New Observations (Gaussian)
pvs.knn
P-Values to Classify New Observations (k Nearest Neighbors)
pvs.logreg
P-Values to Classify New Observations (Penalized...
pvs.wnn
P-Values to Classify New Observations (Weighted Nearest...

Files in this package

pvclass
pvclass/NAMESPACE
pvclass/data
pvclass/data/buerk.RData
pvclass/R
pvclass/R/rocs.R
pvclass/R/pvs.gaussian.R
pvclass/R/CompPVs.R
pvclass/R/cvpvs.knn.R
pvclass/R/analyze.pvs.R
pvclass/R/sigmaSt.R
pvclass/R/pvs.knn.R
pvclass/R/cvpvs.R
pvclass/R/sigmaM.R
pvclass/R/prtable.R
pvclass/R/cvpvs.wnn.R
pvclass/R/pvs.logreg.R
pvclass/R/auxiliaries.R
pvclass/R/cvpvs.logreg.R
pvclass/R/MVTMLE.LDA.R
pvclass/R/penlogreg.R
pvclass/R/pvs.R
pvclass/R/pvplot.R
pvclass/R/cvpvs.gaussian.R
pvclass/R/sigmaSym.R
pvclass/R/pvclass-internal.R
pvclass/R/pvs.wnn.R
pvclass/MD5
pvclass/DESCRIPTION
pvclass/man
pvclass/man/pvs.Rd
pvclass/man/cvpvs.knn.Rd
pvclass/man/pvclass-package.Rd
pvclass/man/pvs.logreg.Rd
pvclass/man/cvpvs.logreg.Rd
pvclass/man/cvpvs.Rd
pvclass/man/cvpvs.gaussian.Rd
pvclass/man/buerk.Rd
pvclass/man/pvs.knn.Rd
pvclass/man/analyze.pvs.Rd
pvclass/man/pvs.wnn.Rd
pvclass/man/pvs.gaussian.Rd
pvclass/man/cvpvs.wnn.Rd