qiimer: Work with QIIME Output Files in R

Open QIIME output files in R, compute statistics, and create plots from the data.

Install the latest version of this package by entering the following in R:
install.packages("qiimer")
AuthorKyle Bittinger <kylebittinger@gmail.com>
Date of publication2015-12-28 00:01:50
MaintainerKyle Bittinger <kylebittinger@gmail.com>
LicenseGPL (>= 2)
Version0.9.4
http://www.r-project.org

View on CRAN

Functions

biom_raw_data Man page
biom_taxonomy Man page
dist_get Man page
dist_groups Man page
dist_subset Man page
make_otu_table Man page
otu_heatmap Man page
qiimer Man page
qiimer-package Man page
rarefaction_stats Man page
read_blast_table Man page
read_qiime_distmat Man page
read_qiime_mapping_file Man page
read_qiime_otu_mapping Man page
read_qiime_otu_table Man page
read_qiime_rarefaction Man page
relmbeta Man page
relmbeta_alpha Man page
relmbeta_assignments Man page
relmbeta_biom Man page
relmbeta_counts Man page
relmbeta_dist Man page
saturated_rainbow Man page
simplify_assignments Man page
split_assignments Man page
taxonomic_ranks Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.