qiimer: Work with QIIME Output Files in R

Open QIIME output files in R, compute statistics, and create plots from the data.

AuthorKyle Bittinger <kylebittinger@gmail.com>
Date of publication2015-12-28 00:01:50
MaintainerKyle Bittinger <kylebittinger@gmail.com>
LicenseGPL (>= 2)
Version0.9.4
http://www.r-project.org

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Files in this package

qiimer
qiimer/inst
qiimer/inst/tests
qiimer/inst/tests/test_biom.R
qiimer/inst/tests/test_distance_matrix.R
qiimer/inst/tests/test_otu_mapping.R
qiimer/inst/tests/test_blast.R
qiimer/inst/tests/test_otu_table.R
qiimer/inst/tests/test_alpha_diversity.R
qiimer/inst/tests/test_sample_mapping.R
qiimer/inst/testdata
qiimer/inst/testdata/otu_table.txt
qiimer/inst/testdata/sample_map.txt
qiimer/inst/testdata/otu_table_dense.biom
qiimer/inst/testdata/distmat.txt
qiimer/inst/testdata/otu_table_sparse.biom
qiimer/inst/testdata/otu_mapping.txt
qiimer/inst/testdata/observed_species.txt
qiimer/inst/testdata/blast_table.txt
qiimer/tests
qiimer/tests/run-all.R
qiimer/NAMESPACE
qiimer/data
qiimer/data/relmbeta_alpha.rda
qiimer/data/relmbeta_counts.rda
qiimer/data/relmbeta_dist.rda
qiimer/data/relmbeta_assignments.rda
qiimer/data/relmbeta_biom.rda
qiimer/data/relmbeta.rda
qiimer/R
qiimer/R/distance_matrix.R qiimer/R/biom.R qiimer/R/otu_mapping.R qiimer/R/blast.R qiimer/R/sample_mapping.R qiimer/R/qiimer.R qiimer/R/alpha_diversity.R qiimer/R/otu_table.R
qiimer/README.md
qiimer/MD5
qiimer/DESCRIPTION
qiimer/man
qiimer/man/relmbeta_alpha.Rd qiimer/man/relmbeta.Rd qiimer/man/taxonomic_ranks.Rd qiimer/man/read_qiime_otu_mapping.Rd qiimer/man/otu_heatmap.Rd qiimer/man/split_assignments.Rd qiimer/man/relmbeta_counts.Rd qiimer/man/read_qiime_rarefaction.Rd qiimer/man/read_blast_table.Rd qiimer/man/relmbeta_assignments.Rd qiimer/man/biom_raw_data.Rd qiimer/man/read_qiime_mapping_file.Rd qiimer/man/read_qiime_otu_table.Rd qiimer/man/rarefaction_stats.Rd qiimer/man/relmbeta_biom.Rd qiimer/man/simplify_assignments.Rd qiimer/man/dist_subset.Rd qiimer/man/dist_get.Rd qiimer/man/relmbeta_dist.Rd qiimer/man/saturated_rainbow.Rd qiimer/man/read_qiime_distmat.Rd qiimer/man/make_otu_table.Rd qiimer/man/dist_groups.Rd qiimer/man/qiimer.Rd qiimer/man/biom_taxonomy.Rd

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