simplify_assignments: Reformat taxonomic assignments for presentation.
In qiimer: Work with QIIME Output Files in R

Reformat taxonomic assignments for presentation.

1	simplify_assignments(assignments_df, rank1 = "Phylum", rank2 = "Genus")

`assignments_df`	A data frame of taxonomic assignments.
`rank1`	The rank of taxonomy to use as the first word in the label.
`rank2`	The rank of taxonomy to use as the second word in the label.

A character vector of reformatted assignment labels.

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data(relmbeta_assignments)
a <- split_assignments(relmbeta_assignments)
head(simplify_assignments(a))

qiimer documentation built on May 2, 2019, 6 a.m.

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