Man pages for qpcR
Modelling and Analysis of Real-Time PCR Data

AICcAkaike's second-order corrected Information Criterion
akaike.weightsCalculation of Akaike weights/relative likelihoods/delta-AICs
calibCalculation of qPCR efficiency using dilution curves and...
Cy0Cy0 alternative to threshold cycles as in Guescini et al....
effThe amplification efficiency curve of a fitted object
efficiencyCalculation of qPCR efficiency and other important qPCR...
evidenceEvidence ratio for model comparisons with AIC, AICc or BIC
expcompComparison of all sigmodal models within the exponential...
expfitCalculation of PCR efficiency by fitting an exponential model
fitchisqThe chi-square goodness-of-fit
getParBatch calculation of qPCR fit...
is.outlierOutlier summary for objects of class 'modlist' or 'replist'
KOD(K)inetic (O)utlier (D)etection using several methods
llratioCalculation of likelihood ratios for nested models
LOF.testFormal lack-Of-Fit test of a nonlinear model against a...
LRECalculation of qPCR efficiency by the 'linear regression of...
maxRatioThe maxRatio method as in Shain et al. (2008)
meltcurveMelting curve analysis with (iterative) Tm identification and...
midpointCalculation of the 'midpoint' region
modlistCreate nonlinear models from a dataframe and coerce them into...
mselectSigmoidal model selection by different criteria
parKODParameters that can be changed to tweak the kinetic outlier...
pcrbatchBatch calculation of qPCR efficiency and other qPCR...
pcrbootBootstrapping and jackknifing qPCR data
pcrfitWorkhorse function for qPCR model fitting
pcrGOFSummarize measures for the goodness-of-fit
pcrimportAdvanced qPCR data import function
pcrimport2Simple qPCR data import function (i.e. from text files or...
pcropt1Combinatorial elimination of plateau and ground phase cycles
pcrsimSimulation of sigmoidal qPCR data with goodness-of-fit...
plot.pcrfitPlotting qPCR data with fitted curves
predict.pcrfitValue prediction from a fitted qPCR model
PRESSAllen's PRESS (Prediction Sum-Of-Squares) statistic, aka...
propagateError propagation using different methods
qpcR_datasetsThe (published) datasets implemented in qpcR
qpcR_functionsThe nonlinear/mechanistic models implemented in qpcR
qpcR.newsDisplay news and changes of qpcR package versions
ratiobatchCalculation of ratios in a batch format for multiple...
ratiocalcCalculation of ratios from qPCR runs with/without reference...
ratioParCalculation of ratios in a batch format from external PCR...
refmeanAveraging of multiple reference genes
replistAmalgamation of single data models into a model containing...
resplotAn (overlayed) residuals barplot
resVarResidual variance of a fitted model
RMSERoot-mean-squared-error of a fitted model
RsqR-square value of a fitted model
Rsq.adAdjusted R-square value of a fitted model
RSSResidual sum-of-squares of a fitted model
sliwinCalculation of qPCR efficiency by the 'window-of-linearity'...
takeoffCalculation of the qPCR takeoff point
update.pcrfitUpdating and refitting a qPCR model
qpcR documentation built on June 14, 2018, 5:04 p.m.