Modelling and Analysis of Real-Time PCR Data

AICc | Akaike's second-order corrected Information Criterion |

akaike.weights | Calculation of Akaike weights/relative likelihoods/delta-AICs |

calib | Calculation of qPCR efficiency using dilution curves and... |

Cy0 | Cy0 alternative to threshold cycles as in Guescini et al.... |

eff | The amplification efficiency curve of a fitted object |

efficiency | Calculation of qPCR efficiency and other important qPCR... |

evidence | Evidence ratio for model comparisons with AIC, AICc or BIC |

expcomp | Comparison of all sigmodal models within the exponential... |

expfit | Calculation of PCR efficiency by fitting an exponential model |

fitchisq | The chi-square goodness-of-fit |

getPar | Batch calculation of qPCR fit... |

is.outlier | Outlier summary for objects of class 'modlist' or 'replist' |

KOD | (K)inetic (O)utlier (D)etection using several methods |

llratio | Calculation of likelihood ratios for nested models |

LOF.test | Formal lack-Of-Fit test of a nonlinear model against a... |

LRE | Calculation of qPCR efficiency by the 'linear regression of... |

maxRatio | The maxRatio method as in Shain et al. (2008) |

meltcurve | Melting curve analysis with (iterative) Tm identification and... |

midpoint | Calculation of the 'midpoint' region |

modlist | Create nonlinear models from a dataframe and coerce them into... |

mselect | Sigmoidal model selection by different criteria |

parKOD | Parameters that can be changed to tweak the kinetic outlier... |

pcrbatch | Batch calculation of qPCR efficiency and other qPCR... |

pcrboot | Bootstrapping and jackknifing qPCR data |

pcrfit | Workhorse function for qPCR model fitting |

pcrGOF | Summarize measures for the goodness-of-fit |

pcrimport | Advanced qPCR data import function |

pcrimport2 | Simple qPCR data import function (i.e. from text files or... |

pcropt1 | Combinatorial elimination of plateau and ground phase cycles |

pcrsim | Simulation of sigmoidal qPCR data with goodness-of-fit... |

plot.pcrfit | Plotting qPCR data with fitted curves |

predict.pcrfit | Value prediction from a fitted qPCR model |

PRESS | Allen's PRESS (Prediction Sum-Of-Squares) statistic, aka... |

propagate | Error propagation using different methods |

qpcR_datasets | The (published) datasets implemented in qpcR |

qpcR_functions | The nonlinear/mechanistic models implemented in qpcR |

qpcR.news | Display news and changes of qpcR package versions |

ratiobatch | Calculation of ratios in a batch format for multiple... |

ratiocalc | Calculation of ratios from qPCR runs with/without reference... |

ratioPar | Calculation of ratios in a batch format from external PCR... |

refmean | Averaging of multiple reference genes |

replist | Amalgamation of single data models into a model containing... |

resplot | An (overlayed) residuals barplot |

resVar | Residual variance of a fitted model |

RMSE | Root-mean-squared-error of a fitted model |

Rsq | R-square value of a fitted model |

Rsq.ad | Adjusted R-square value of a fitted model |

RSS | Residual sum-of-squares of a fitted model |

sliwin | Calculation of qPCR efficiency by the 'window-of-linearity'... |

takeoff | Calculation of the qPCR takeoff point |

update.pcrfit | Updating and refitting a qPCR model |

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