markerlrt: General likelihood ratio test for association between marker...
In qtl: Tools for Analyzing QTL Experiments
markerlrt R Documentation
General likelihood ratio test for association between marker pairs
Description
Calculate a LOD score for a general likelihood ratio test for each
pair of markers, to assess their association.
Usage
markerlrt(cross)
Arguments
cross
An object of class cross. See
read.cross for details.
Value
The input cross object is returned with a component, rf,
added. This is a matrix of size (tot.mar x tot.mar). The diagonal
contains the number of typed meioses per marker, the upper and lower triangles
each contain the LOD scores.
Author(s)
Karl W Broman, broman@wisc.edu
See Also
plotRF, est.rf,
badorder
Examples
data(badorder)
badorder <- markerlrt(badorder)
plotRF(badorder)
qtl documentation built on Sept. 11, 2024, 5:43 p.m.
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| markerlrt | R Documentation |
General likelihood ratio test for association between marker pairs
Description
Calculate a LOD score for a general likelihood ratio test for each pair of markers, to assess their association.
Usage
markerlrt(cross)
Arguments
cross |
An object of class |
Value
The input cross object is returned with a component, rf,
added. This is a matrix of size (tot.mar x tot.mar). The diagonal
contains the number of typed meioses per marker, the upper and lower triangles
each contain the LOD scores.
Author(s)
Karl W Broman, broman@wisc.edu
See Also
plotRF, est.rf,
badorder
Examples
data(badorder)
badorder <- markerlrt(badorder)
plotRF(badorder)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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