plot.comparegeno: Plot genotype comparison

In qtl: Tools for Analyzing QTL Experiments

Plot genotype comparison

Description

Plot the results of the comparison of all pairs of individuals' genotypes. A histogram of the proportion of matching genotypes, with tick marks at individual values below, via rug.

Usage

## S3 method for class 'comparegeno'
plot(x, breaks=NULL, main="",
     xlab="Proportion matching genotypes", ...)

Arguments

x	An object of class "comparegeno", as produced by comparegeno.
breaks	Passed to hist, with the default 2 \sqrt{n} where n is the number of pairs of individuals.
main	Title for the plot.
xlab	x-axis label for the plot.
...	Passed to hist.

Details

Creates a histogram with hist with ticks at individual values using rug.

Value

None.

Author(s)

Karl W Broman, [e-mail]

See Also

comparegeno, summary.comparegeno

Examples

data(fake.f2)
cg <- comparegeno(fake.f2)
plot(cg)

qtl documentation built on Sept. 11, 2024, 5:43 p.m.