summary.comparegeno: Print pairs of individuals with similar genotype data.

In qtl: Tools for Analyzing QTL Experiments

Print pairs of individuals with similar genotype data.

Description

Prints a summary the output from comparegeno that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold.

Usage

## S3 method for class 'comparegeno'
summary(object, thresh=0.9, ...)

Arguments

object	An object of class comparegeno, the output of the function comparegeno.
thresh	Threshold on the proportion of matching genotypes.
...	Ignored at this point.

Value

A data frame with each row being a pair of individuals and columns including the individual identifiers (via getid, or just as numeric indexes) along with the proportion of matching genotypes.

Author(s)

Karl W Broman, [e-mail]

See Also

comparegeno, plot.comparegeno

Examples

data(fake.f2)
cg <- comparegeno(fake.f2)
summary(cg, 0.7)

qtl documentation built on Sept. 11, 2024, 5:43 p.m.