summary.scanoneboot: Bootstrap confidence interval for QTL location

Description Usage Arguments Value Author(s) See Also Examples

View source: R/scanoneboot.R

Description

Calculates a bootstrap confidence interval for QTL location, using the bootstrap results from scanoneboot.

Usage

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## S3 method for class 'scanoneboot'
summary(object, prob=0.95, expandtomarkers=FALSE, ...)

Arguments

object

Output from scanoneboot.

prob

Desired coverage.

expandtomarkers

If TRUE, the interval is expanded to the nearest flanking markers.

...

Ignored at this point.

Value

An object of class scanone, indicating the position with the maximum LOD, and indicating endpoints for the estimated bootstrap confidence interval.

Author(s)

Karl W Broman, [email protected]

See Also

scanoneboot, plot.scanoneboot, lodint, bayesint

Examples

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## Not run: data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2, step=1, err=0.001)
bootoutput <- scanoneboot(fake.f2, chr=13, method="hk")

summary(bootoutput)
## End(Not run)

qtl documentation built on June 20, 2017, 9:05 a.m.