optselection: Optimal selection fraction
In qtlDesign: Design of QTL experiments
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Functions to find optimal selection fractions given cost.
Usage
1
2
3
optselection(cost,d=0,G=NULL,cross)
optselection.bc(cost,d=0,G=NULL)
optselection.f2(cost,d=0,G=NULL)
Arguments
cost
Cost per genotype in units of raising individual
d
Marker spacing in Morgans
G
Genome size in Morgans
cross
Cross type, "bc" or "f2"
Details
The function optimize is used to search for the optima.
Value
The optimal selection fraction.
Author(s)
Saunak Sen, Jaya Satagopan, Karl Broman, and Gary Churchill
References
Sen S, Satagopan JM, Churchill GA (2005)
Quantitative trait locus study design from an information perspective.
Genetics, 170:447-64.
See Also
Examples
1
2
3
optselection(1,cross="bc")
optselection(0.001,10,1450,cross="bc")
optselection(0.001,10,1450,cross="f2")
qtlDesign documentation built on May 2, 2019, 5:21 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Functions to find optimal selection fractions given cost.
Usage
1 2 3 | optselection(cost,d=0,G=NULL,cross)
optselection.bc(cost,d=0,G=NULL)
optselection.f2(cost,d=0,G=NULL)
|
Arguments
cost |
Cost per genotype in units of raising individual |
d |
Marker spacing in Morgans |
G |
Genome size in Morgans |
cross |
Cross type, "bc" or "f2" |
Details
The function optimize is used to search for the optima.
Value
The optimal selection fraction.
Author(s)
Saunak Sen, Jaya Satagopan, Karl Broman, and Gary Churchill
References
Sen S, Satagopan JM, Churchill GA (2005) Quantitative trait locus study design from an information perspective. Genetics, 170:447-64.
See Also
Examples
1 2 3 | optselection(1,cross="bc")
optselection(0.001,10,1450,cross="bc")
optselection(0.001,10,1450,cross="f2")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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