qtlhot: Inference for QTL Hotspots

Functions to infer co-mapping trait hotspots and causal models

AuthorElias Chaibub Neto <echaibub@hotmail.com> and Brian S Yandell <byandell@wisc.edu>
Date of publication2013-09-19 08:54:03
MaintainerBrian S. Yandell <byandell@wisc.edu>
LicenseGPL (>= 2)
Version0.9.0
http://www.stat.wisc.edu/~yandell/statgen

View on CRAN

Files in this package

qtlhot
qtlhot/inst
qtlhot/inst/parallel
qtlhot/inst/parallel/Phase1.R
qtlhot/inst/parallel/cross.RData
qtlhot/inst/parallel/params.txt
qtlhot/inst/parallel/Phase3.R
qtlhot/inst/parallel/ReadMe
qtlhot/inst/parallel/runparallel.sh
qtlhot/inst/parallel/SOAR.post.R
qtlhot/inst/parallel/Phase2.R
qtlhot/inst/parallel/Phase0.R
qtlhot/inst/parallel/SOAR.phase0.R
qtlhot/inst/notes
qtlhot/inst/notes/plot.R
qtlhot/inst/notes/cmst.txt
qtlhot/inst/notes/code.txt
qtlhot/inst/notes/perm.txt
qtlhot/inst/notes/vignette.txt
qtlhot/inst/deprecated.R
qtlhot/inst/doc
qtlhot/inst/doc/cmst.pdf
qtlhot/inst/doc/qtlhot.pdf
qtlhot/inst/doc/qtlhot.Rnw
qtlhot/inst/doc/cmst.R
qtlhot/inst/doc/qtlhot.R
qtlhot/inst/doc/cmst.Rnw
qtlhot/src
qtlhot/src/Makevars
qtlhot/src/runningmean.c
qtlhot/src/runningmean.h
qtlhot/NAMESPACE
qtlhot/data
qtlhot/data/CMSTCross.RData
qtlhot/data/hotperm1.RData
qtlhot/R
qtlhot/R/sliding.R qtlhot/R/parallel.R qtlhot/R/multiple_testing_sim_functions.R qtlhot/R/big.R qtlhot/R/plotcmst.R qtlhot/R/simcmst.R qtlhot/R/westwu.R qtlhot/R/rug.R qtlhot/R/add.phenos.R qtlhot/R/runningmean.R qtlhot/R/highlod.R qtlhot/R/cmst.R qtlhot/R/utilhot.R qtlhot/R/study.R qtlhot/R/utilcmst.R qtlhot/R/simhot.R qtlhot/R/ravel.R qtlhot/R/roc.R qtlhot/R/hotperm.R qtlhot/R/max.R qtlhot/R/neqtl.R qtlhot/R/hotsize.R
qtlhot/vignettes
qtlhot/vignettes/savedperms.RData
qtlhot/vignettes/qtlhot.Rnw
qtlhot/vignettes/cmst.Rnw
qtlhot/MD5
qtlhot/README
qtlhot/build
qtlhot/build/vignette.rds
qtlhot/DESCRIPTION
qtlhot/man
qtlhot/man/hotsize.Rd qtlhot/man/GetCommonQtls.Rd qtlhot/man/westwu.Rd qtlhot/man/GetCandReg.Rd qtlhot/man/parallel.qtlhot.Rd qtlhot/man/add.phenos.Rd qtlhot/man/SimCrossCausal.Rd qtlhot/man/hotperm.Rd qtlhot/man/filter.threshold.Rd qtlhot/man/sim.hotspot.Rd qtlhot/man/PrecTpFpMatrix.Rd qtlhot/man/CMSTtests.Rd qtlhot/man/highlod.Rd

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