traits-class: An S4 class to represent a set of PGS Catalog Traits
In quincunx: REST API Client for the 'PGS' Catalog

traits-class

R Documentation

An S4 class to represent a set of PGS Catalog Traits

Description

The traits object consists of six slots, each a table (tibble), that combined form a relational database of a subset of PGS Catalog traits. Each trait is an observation (row) in the traits table — main table. All tables have the column efo_id as primary key.

Slots

traits

A table of traits. Columns:

efo_id: An EFO identifier.
parent_efo_id: An EFO identifier of the parent trait.
is_child: Is this trait obtained because it is a child of other trait?
trait: Trait name.
description: Detailed description of the trait from EFO.
url: External link to the EFO entry.

pgs_ids

A table of associated polygenic score identifiers. Columns:

efo_id: An EFO identifier.
parent_efo_id: An EFO identifier of the parent trait.
is_child: Is this trait obtained because it is a child of other trait?
pgs_id: Polygenic Score (PGS) identifier.

child_pgs_ids

A table of polygenic score identifiers associated with the child traits. Columns:

efo_id: An EFO identifier.
parent_efo_id: An EFO identifier of the parent trait.
is_child: Is this trait obtained because it is a child of other trait?
child_pgs_id: Polygenic Score (PGS) identifiers associated with child traits.

trait_categories