plot.functional_suppression_profiles: Plot functional suppression profiles

In r4pde: Tools for Quantitative Plant Disease Epidemiology

Plot functional suppression profiles

Description

Plot functional suppression profiles

Usage

## S3 method for class 'functional_suppression_profiles'
plot(
  x,
  type = c("dendrogram", "profiles", "heatmap", "rank", "all"),
  show_cut = TRUE,
  show_points = FALSE,
  ...
)

Arguments

x	An object of class "functional_suppression_profiles".
type	Character string specifying the plot type. One of "dendrogram", "profiles", "heatmap", "rank", or "all".
show_cut	Logical; whether to display the cluster cut height in dendrogram. Default is TRUE.
show_points	Logical; whether to overlay observed DSP values as points in the profiles plot. Default is FALSE.
...	Additional arguments passed to specific plot functions.

Details

The plot method visualizes the components of a Functional Suppression Profile. The dendrogram defines the Functional Suppression Profiles based on temporal similarity. The heatmap is ordered by the dendrogram to help interpret these functional groups using summary metrics.

Value

A ggplot object or a list of ggplot objects.

r4pde documentation built on Sept. 8, 2026, 1:10 a.m.